miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26549 5' -60.2 NC_005357.1 + 2576 0.66 0.403975
Target:  5'- gCCCaGCGCGUgcgcgcgcuUGcCGCCCUGuuGCAa -3'
miRNA:   3'- -GGGcUGCGCG---------ACuGCGGGACugCGUc -5'
26549 5' -60.2 NC_005357.1 + 3703 0.66 0.422249
Target:  5'- -gCGACGCGCUG-C-CCCaugcGGCGCAu -3'
miRNA:   3'- ggGCUGCGCGACuGcGGGa---CUGCGUc -5'
26549 5' -60.2 NC_005357.1 + 4498 0.68 0.312877
Target:  5'- gCCgGAUGCGCgcGGCGCCaCaGGCGCu- -3'
miRNA:   3'- -GGgCUGCGCGa-CUGCGG-GaCUGCGuc -5'
26549 5' -60.2 NC_005357.1 + 5113 0.68 0.310623
Target:  5'- gUCCGGUGCgGCUGGCGCCgUUGaacugcaacgugccGCGCAGg -3'
miRNA:   3'- -GGGCUGCG-CGACUGCGG-GAC--------------UGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 7173 1.09 0.000284
Target:  5'- gCCCGACGCGCUGACGCCCUGACGCAGc -3'
miRNA:   3'- -GGGCUGCGCGACUGCGGGACUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 8168 0.67 0.344109
Target:  5'- uCCCuGCGCGU--GCGCCCgGAUGCu- -3'
miRNA:   3'- -GGGcUGCGCGacUGCGGGaCUGCGuc -5'
26549 5' -60.2 NC_005357.1 + 8174 0.66 0.422249
Target:  5'- gCCCaGGaagGCGCUGGCGUCCUGcccguuCGuCAGc -3'
miRNA:   3'- -GGG-CUg--CGCGACUGCGGGACu-----GC-GUC- -5'
26549 5' -60.2 NC_005357.1 + 9485 0.68 0.323558
Target:  5'- aUCGACGCaGCcgUGGuCGCCCUGGCcgaacagccagccguGCAGg -3'
miRNA:   3'- gGGCUGCG-CG--ACU-GCGGGACUG---------------CGUC- -5'
26549 5' -60.2 NC_005357.1 + 9814 0.71 0.204155
Target:  5'- aCCgCGGCGuCGC-GGC-CCUUGACGCGGg -3'
miRNA:   3'- -GG-GCUGC-GCGaCUGcGGGACUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 9874 0.72 0.165361
Target:  5'- aCCGGCGCGCUGcuucuCGgCCaGGCGCGu -3'
miRNA:   3'- gGGCUGCGCGACu----GCgGGaCUGCGUc -5'
26549 5' -60.2 NC_005357.1 + 10380 0.66 0.43157
Target:  5'- gUCGAUGuCGCcGAUGUCCgggUGAUGCAGc -3'
miRNA:   3'- gGGCUGC-GCGaCUGCGGG---ACUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 12199 0.7 0.238225
Target:  5'- aCCGGCccGCGCUGcCuGCCCcuggucggGACGCAGc -3'
miRNA:   3'- gGGCUG--CGCGACuG-CGGGa-------CUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 12267 0.72 0.169821
Target:  5'- aCUGGCGCcaacugccGCUGAUGUCC-GACGCGGu -3'
miRNA:   3'- gGGCUGCG--------CGACUGCGGGaCUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 12621 0.66 0.403075
Target:  5'- gCCGACGCGCucggcaucgcugcUGcCGUCCuuUGGCGuCGGg -3'
miRNA:   3'- gGGCUGCGCG-------------ACuGCGGG--ACUGC-GUC- -5'
26549 5' -60.2 NC_005357.1 + 12656 0.66 0.413049
Target:  5'- gCCGAaaucuCGCGC--ACGCgCCUGGCaGCAGc -3'
miRNA:   3'- gGGCU-----GCGCGacUGCG-GGACUG-CGUC- -5'
26549 5' -60.2 NC_005357.1 + 12726 0.69 0.256978
Target:  5'- gCCCGGCccguugGUGCUGggugccGCGCCCaGACGCu- -3'
miRNA:   3'- -GGGCUG------CGCGAC------UGCGGGaCUGCGuc -5'
26549 5' -60.2 NC_005357.1 + 12846 0.71 0.193773
Target:  5'- aCCG-CGCGCcugGGCGCggccgaCCUGACGCGa -3'
miRNA:   3'- gGGCuGCGCGa--CUGCG------GGACUGCGUc -5'
26549 5' -60.2 NC_005357.1 + 13176 0.68 0.305412
Target:  5'- gUCGGcCGCGCUgGGCGCCCUuGGC-CGGc -3'
miRNA:   3'- gGGCU-GCGCGA-CUGCGGGA-CUGcGUC- -5'
26549 5' -60.2 NC_005357.1 + 14158 0.67 0.336095
Target:  5'- uCCCaGCGCGCggucaugGuGCGCaacauggugagCCUGGCGCAGu -3'
miRNA:   3'- -GGGcUGCGCGa------C-UGCG-----------GGACUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 14537 0.67 0.351438
Target:  5'- uCCgCGACGUGCUGggcgagcACGCCaagaUGgcgaGCGCGGa -3'
miRNA:   3'- -GG-GCUGCGCGAC-------UGCGGg---AC----UGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.