Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26549 | 5' | -60.2 | NC_005357.1 | + | 32096 | 0.66 | 0.395028 |
Target: 5'- -aCGGcCGCGUUGcucaACGCCCUGGcCGCu- -3' miRNA: 3'- ggGCU-GCGCGAC----UGCGGGACU-GCGuc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 13176 | 0.68 | 0.305412 |
Target: 5'- gUCGGcCGCGCUgGGCGCCCUuGGC-CGGc -3' miRNA: 3'- gGGCU-GCGCGA-CUGCGGGA-CUGcGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 16114 | 0.68 | 0.320479 |
Target: 5'- aCCGGCuGCaCgucgGugGCCCcGACGUAGg -3' miRNA: 3'- gGGCUG-CGcGa---CugCGGGaCUGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 42020 | 0.68 | 0.328218 |
Target: 5'- cCCgCGACGUGCUGcucaacagucGCGCgCUGGcCGCGc -3' miRNA: 3'- -GG-GCUGCGCGAC----------UGCGgGACU-GCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 8168 | 0.67 | 0.344109 |
Target: 5'- uCCCuGCGCGU--GCGCCCgGAUGCu- -3' miRNA: 3'- -GGGcUGCGCGacUGCGGGaCUGCGuc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 20735 | 0.67 | 0.368967 |
Target: 5'- gCCGACauGCuGCUGGCGCCgUagaGGCGCu- -3' miRNA: 3'- gGGCUG--CG-CGACUGCGGgA---CUGCGuc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 35860 | 0.67 | 0.368967 |
Target: 5'- gCCGAgGCGgaUGGCaaGCCCU-ACGCGGg -3' miRNA: 3'- gGGCUgCGCg-ACUG--CGGGAcUGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 37043 | 0.67 | 0.377522 |
Target: 5'- uCgCGGCGCGCaccagUGACauaaCCCUGgGCGCGGu -3' miRNA: 3'- -GgGCUGCGCG-----ACUGc---GGGAC-UGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 28315 | 0.67 | 0.380114 |
Target: 5'- aCUCGGCGCGCUcGGCgucggacucgaugGCCUUGgccucgucgggcagcGCGCGGa -3' miRNA: 3'- -GGGCUGCGCGA-CUG-------------CGGGAC---------------UGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 36625 | 0.68 | 0.304673 |
Target: 5'- gCCCGACuauccgcugGCGCUgccgcgauggcggGACacgauggucaagGCCCUGGCGCAc -3' miRNA: 3'- -GGGCUG---------CGCGA-------------CUG------------CGGGACUGCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 34496 | 0.69 | 0.283841 |
Target: 5'- gCCGugGCGUgaaggugGACGCCgaG-CGCAa -3' miRNA: 3'- gGGCugCGCGa------CUGCGGgaCuGCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 18094 | 0.69 | 0.263493 |
Target: 5'- gCCGGCGCGaaccagGACGCCUUcGCGCc- -3' miRNA: 3'- gGGCUGCGCga----CUGCGGGAcUGCGuc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 9874 | 0.72 | 0.165361 |
Target: 5'- aCCGGCGCGCUGcuucuCGgCCaGGCGCGu -3' miRNA: 3'- gGGCUGCGCGACu----GCgGGaCUGCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 27438 | 0.72 | 0.179067 |
Target: 5'- gCCCGGCG-GCcGcAgGCCCUGGCGCuGg -3' miRNA: 3'- -GGGCUGCgCGaC-UgCGGGACUGCGuC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 21777 | 0.71 | 0.183856 |
Target: 5'- gCCCGGCacgGUGCUGAUGUCCUGGuucuugGCGGa -3' miRNA: 3'- -GGGCUG---CGCGACUGCGGGACUg-----CGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 38043 | 0.71 | 0.198905 |
Target: 5'- gCCCGGCGCGaC-GGCGCCUggcuGCGCAu -3' miRNA: 3'- -GGGCUGCGC-GaCUGCGGGac--UGCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 23095 | 0.7 | 0.22063 |
Target: 5'- cCCCGACGCcaacgGC-GGCGCCCacGGCGaCAGc -3' miRNA: 3'- -GGGCUGCG-----CGaCUGCGGGa-CUGC-GUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 12199 | 0.7 | 0.238225 |
Target: 5'- aCCGGCccGCGCUGcCuGCCCcuggucggGACGCAGc -3' miRNA: 3'- gGGCUG--CGCGACuG-CGGGa-------CUGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 12726 | 0.69 | 0.256978 |
Target: 5'- gCCCGGCccguugGUGCUGggugccGCGCCCaGACGCu- -3' miRNA: 3'- -GGGCUG------CGCGAC------UGCGGGaCUGCGuc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 36691 | 0.69 | 0.256978 |
Target: 5'- gCCCGGCGCGCUgGGCGaUCUG-UGCGa -3' miRNA: 3'- -GGGCUGCGCGA-CUGCgGGACuGCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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