miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26549 5' -60.2 NC_005357.1 + 7173 1.09 0.000284
Target:  5'- gCCCGACGCGCUGACGCCCUGACGCAGc -3'
miRNA:   3'- -GGGCUGCGCGACUGCGGGACUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 29919 0.77 0.070464
Target:  5'- cCUCGACGCGCUGuucaugaaaACGCCaCUGuGCGCGGc -3'
miRNA:   3'- -GGGCUGCGCGAC---------UGCGG-GAC-UGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 24150 0.72 0.161005
Target:  5'- aCCGGCcCGCUGACGgCCggcaaguucucGGCGCAGg -3'
miRNA:   3'- gGGCUGcGCGACUGCgGGa----------CUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 9874 0.72 0.165361
Target:  5'- aCCGGCGCGCUGcuucuCGgCCaGGCGCGu -3'
miRNA:   3'- gGGCUGCGCGACu----GCgGGaCUGCGUc -5'
26549 5' -60.2 NC_005357.1 + 12267 0.72 0.169821
Target:  5'- aCUGGCGCcaacugccGCUGAUGUCC-GACGCGGu -3'
miRNA:   3'- gGGCUGCG--------CGACUGCGGGaCUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 27438 0.72 0.179067
Target:  5'- gCCCGGCG-GCcGcAgGCCCUGGCGCuGg -3'
miRNA:   3'- -GGGCUGCgCGaC-UgCGGGACUGCGuC- -5'
26549 5' -60.2 NC_005357.1 + 31741 0.71 0.183856
Target:  5'- gCCGuGCGCGCUGcCGUCaaGACGCAa -3'
miRNA:   3'- gGGC-UGCGCGACuGCGGgaCUGCGUc -5'
26549 5' -60.2 NC_005357.1 + 21777 0.71 0.183856
Target:  5'- gCCCGGCacgGUGCUGAUGUCCUGGuucuugGCGGa -3'
miRNA:   3'- -GGGCUG---CGCGACUGCGGGACUg-----CGUC- -5'
26549 5' -60.2 NC_005357.1 + 12846 0.71 0.193773
Target:  5'- aCCG-CGCGCcugGGCGCggccgaCCUGACGCGa -3'
miRNA:   3'- gGGCuGCGCGa--CUGCG------GGACUGCGUc -5'
26549 5' -60.2 NC_005357.1 + 38043 0.71 0.198905
Target:  5'- gCCCGGCGCGaC-GGCGCCUggcuGCGCAu -3'
miRNA:   3'- -GGGCUGCGC-GaCUGCGGGac--UGCGUc -5'
26549 5' -60.2 NC_005357.1 + 29139 0.71 0.198905
Target:  5'- cCCCGGCGCGCUGcaaucgGCGCUgaaaGACGCc- -3'
miRNA:   3'- -GGGCUGCGCGAC------UGCGGga--CUGCGuc -5'
26549 5' -60.2 NC_005357.1 + 15357 0.71 0.204155
Target:  5'- uUCGACcagcagGgGCUGACGCCCUGA-GCAu -3'
miRNA:   3'- gGGCUG------CgCGACUGCGGGACUgCGUc -5'
26549 5' -60.2 NC_005357.1 + 9814 0.71 0.204155
Target:  5'- aCCgCGGCGuCGC-GGC-CCUUGACGCGGg -3'
miRNA:   3'- -GG-GCUGC-GCGaCUGcGGGACUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 23095 0.7 0.22063
Target:  5'- cCCCGACGCcaacgGC-GGCGCCCacGGCGaCAGc -3'
miRNA:   3'- -GGGCUGCG-----CGaCUGCGGGa-CUGC-GUC- -5'
26549 5' -60.2 NC_005357.1 + 35869 0.7 0.22063
Target:  5'- uCCUcaagGAUGCGCUGACGC-CUGGCGauuCGGg -3'
miRNA:   3'- -GGG----CUGCGCGACUGCGgGACUGC---GUC- -5'
26549 5' -60.2 NC_005357.1 + 17348 0.7 0.232233
Target:  5'- gCCgGGCGCGCUG-CGCUggGugGCGa -3'
miRNA:   3'- -GGgCUGCGCGACuGCGGgaCugCGUc -5'
26549 5' -60.2 NC_005357.1 + 12199 0.7 0.238225
Target:  5'- aCCGGCccGCGCUGcCuGCCCcuggucggGACGCAGc -3'
miRNA:   3'- gGGCUG--CGCGACuG-CGGGa-------CUGCGUC- -5'
26549 5' -60.2 NC_005357.1 + 36691 0.69 0.256978
Target:  5'- gCCCGGCGCGCUgGGCGaUCUG-UGCGa -3'
miRNA:   3'- -GGGCUGCGCGA-CUGCgGGACuGCGUc -5'
26549 5' -60.2 NC_005357.1 + 12726 0.69 0.256978
Target:  5'- gCCCGGCccguugGUGCUGggugccGCGCCCaGACGCu- -3'
miRNA:   3'- -GGGCUG------CGCGAC------UGCGGGaCUGCGuc -5'
26549 5' -60.2 NC_005357.1 + 42028 0.69 0.262836
Target:  5'- aCCGcCGUGCUGcugguggGCGCCCUGG-GCAu -3'
miRNA:   3'- gGGCuGCGCGAC-------UGCGGGACUgCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.