Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26549 | 5' | -60.2 | NC_005357.1 | + | 12199 | 0.7 | 0.238225 |
Target: 5'- aCCGGCccGCGCUGcCuGCCCcuggucggGACGCAGc -3' miRNA: 3'- gGGCUG--CGCGACuG-CGGGa-------CUGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 12726 | 0.69 | 0.256978 |
Target: 5'- gCCCGGCccguugGUGCUGggugccGCGCCCaGACGCu- -3' miRNA: 3'- -GGGCUG------CGCGAC------UGCGGGaCUGCGuc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 36691 | 0.69 | 0.256978 |
Target: 5'- gCCCGGCGCGCUgGGCGaUCUG-UGCGa -3' miRNA: 3'- -GGGCUGCGCGA-CUGCgGGACuGCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 18094 | 0.69 | 0.263493 |
Target: 5'- gCCGGCGCGaaccagGACGCCUUcGCGCc- -3' miRNA: 3'- gGGCUGCGCga----CUGCGGGAcUGCGuc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 34496 | 0.69 | 0.283841 |
Target: 5'- gCCGugGCGUgaaggugGACGCCgaG-CGCAa -3' miRNA: 3'- gGGCugCGCGa------CUGCGGgaCuGCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 36625 | 0.68 | 0.304673 |
Target: 5'- gCCCGACuauccgcugGCGCUgccgcgauggcggGACacgauggucaagGCCCUGGCGCAc -3' miRNA: 3'- -GGGCUG---------CGCGA-------------CUG------------CGGGACUGCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 35869 | 0.7 | 0.22063 |
Target: 5'- uCCUcaagGAUGCGCUGACGC-CUGGCGauuCGGg -3' miRNA: 3'- -GGG----CUGCGCGACUGCGgGACUGC---GUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 17348 | 0.7 | 0.232233 |
Target: 5'- gCCgGGCGCGCUG-CGCUggGugGCGa -3' miRNA: 3'- -GGgCUGCGCGACuGCGGgaCugCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 42028 | 0.69 | 0.262836 |
Target: 5'- aCCGcCGUGCUGcugguggGCGCCCUGG-GCAu -3' miRNA: 3'- gGGCuGCGCGAC-------UGCGGGACUgCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 36194 | 0.69 | 0.270141 |
Target: 5'- aCCGGCGUGC--AgGCCCUGgccgaaggcaaaACGCAGa -3' miRNA: 3'- gGGCUGCGCGacUgCGGGAC------------UGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 37982 | 0.68 | 0.29736 |
Target: 5'- -aUGACGgugccacCGCUGGCGgcuuccCCCUGGCGCGGc -3' miRNA: 3'- ggGCUGC-------GCGACUGC------GGGACUGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 14971 | 0.68 | 0.3032 |
Target: 5'- -gCGGCGCGCUGGCauaccagcgccaggGCCUgcggccgccgGGCGCGGu -3' miRNA: 3'- ggGCUGCGCGACUG--------------CGGGa---------CUGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 15357 | 0.71 | 0.204155 |
Target: 5'- uUCGACcagcagGgGCUGACGCCCUGA-GCAu -3' miRNA: 3'- gGGCUG------CgCGACUGCGGGACUgCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 9814 | 0.71 | 0.204155 |
Target: 5'- aCCgCGGCGuCGC-GGC-CCUUGACGCGGg -3' miRNA: 3'- -GG-GCUGC-GCGaCUGcGGGACUGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 29139 | 0.71 | 0.198905 |
Target: 5'- cCCCGGCGCGCUGcaaucgGCGCUgaaaGACGCc- -3' miRNA: 3'- -GGGCUGCGCGAC------UGCGGga--CUGCGuc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 12846 | 0.71 | 0.193773 |
Target: 5'- aCCG-CGCGCcugGGCGCggccgaCCUGACGCGa -3' miRNA: 3'- gGGCuGCGCGa--CUGCG------GGACUGCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 31741 | 0.71 | 0.183856 |
Target: 5'- gCCGuGCGCGCUGcCGUCaaGACGCAa -3' miRNA: 3'- gGGC-UGCGCGACuGCGGgaCUGCGUc -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 12267 | 0.72 | 0.169821 |
Target: 5'- aCUGGCGCcaacugccGCUGAUGUCC-GACGCGGu -3' miRNA: 3'- gGGCUGCG--------CGACUGCGGGaCUGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 24150 | 0.72 | 0.161005 |
Target: 5'- aCCGGCcCGCUGACGgCCggcaaguucucGGCGCAGg -3' miRNA: 3'- gGGCUGcGCGACUGCgGGa----------CUGCGUC- -5' |
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26549 | 5' | -60.2 | NC_005357.1 | + | 17925 | 0.66 | 0.435332 |
Target: 5'- aUCGGCGUG--GGCGCcagccccuacgacuuCCUGGCGCAGg -3' miRNA: 3'- gGGCUGCGCgaCUGCG---------------GGACUGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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