miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26551 5' -64.2 NC_005357.1 + 20178 0.66 0.268655
Target:  5'- gGCCGGCGaaUACgCCaUCGCgGCCg- -3'
miRNA:   3'- gCGGCCGCagGUG-GGaAGCGgCGGgu -5'
26551 5' -64.2 NC_005357.1 + 13885 0.66 0.255801
Target:  5'- gGCCGGCGgCCGCaaggucgUGCCGUUCAa -3'
miRNA:   3'- gCGGCCGCaGGUGggaa---GCGGCGGGU- -5'
26551 5' -64.2 NC_005357.1 + 32572 0.66 0.255801
Target:  5'- gCGCCGGUG-CCACgCUcaUCGaCGCCgAa -3'
miRNA:   3'- -GCGGCCGCaGGUGgGA--AGCgGCGGgU- -5'
26551 5' -64.2 NC_005357.1 + 14219 0.66 0.249565
Target:  5'- uCGUCGGCGUggCCgACCUggacaaggCGCCGCaCCu -3'
miRNA:   3'- -GCGGCCGCA--GG-UGGGaa------GCGGCG-GGu -5'
26551 5' -64.2 NC_005357.1 + 13105 0.66 0.249565
Target:  5'- gGCCGGCGaCCGCCa----CCGCCUu -3'
miRNA:   3'- gCGGCCGCaGGUGGgaagcGGCGGGu -5'
26551 5' -64.2 NC_005357.1 + 31508 0.66 0.243455
Target:  5'- cCGCCGGCGUgCugCUgggccUCGCUGUguugCCGu -3'
miRNA:   3'- -GCGGCCGCAgGugGGa----AGCGGCG----GGU- -5'
26551 5' -64.2 NC_005357.1 + 25309 0.66 0.243455
Target:  5'- gGCCGGCccugCCACCggcgcUCGUCGCCgGg -3'
miRNA:   3'- gCGGCCGca--GGUGGga---AGCGGCGGgU- -5'
26551 5' -64.2 NC_005357.1 + 6326 0.66 0.243455
Target:  5'- aCGCgGcGCGuUCCGCCCcagccaaagCGCCcgGCCCGa -3'
miRNA:   3'- -GCGgC-CGC-AGGUGGGaa-------GCGG--CGGGU- -5'
26551 5' -64.2 NC_005357.1 + 41698 0.66 0.243455
Target:  5'- gGCCGGCGUugUCGgCaaa-GCCGCCCc -3'
miRNA:   3'- gCGGCCGCA--GGUgGgaagCGGCGGGu -5'
26551 5' -64.2 NC_005357.1 + 33206 0.66 0.23747
Target:  5'- cCGCCgGGCGcgCCGCagaaCgugCGCCGCgCCGc -3'
miRNA:   3'- -GCGG-CCGCa-GGUGg---Gaa-GCGGCG-GGU- -5'
26551 5' -64.2 NC_005357.1 + 20176 0.66 0.23747
Target:  5'- gCGCCuugcGGC-UUCGCCUUgUCGUCGCCCu -3'
miRNA:   3'- -GCGG----CCGcAGGUGGGA-AGCGGCGGGu -5'
26551 5' -64.2 NC_005357.1 + 32947 0.66 0.231609
Target:  5'- gGCUGGCaugaCGCCCgaagaaUUCGCUGCCUAu -3'
miRNA:   3'- gCGGCCGcag-GUGGG------AAGCGGCGGGU- -5'
26551 5' -64.2 NC_005357.1 + 26005 0.67 0.220252
Target:  5'- cCGCCGGCGaUUACCC--CGCgGCCg- -3'
miRNA:   3'- -GCGGCCGCaGGUGGGaaGCGgCGGgu -5'
26551 5' -64.2 NC_005357.1 + 31992 0.67 0.220252
Target:  5'- aCGCCaGCGUCCugugcgaaACCCUcgacaCGCuggaCGCCCAc -3'
miRNA:   3'- -GCGGcCGCAGG--------UGGGAa----GCG----GCGGGU- -5'
26551 5' -64.2 NC_005357.1 + 40008 0.67 0.220252
Target:  5'- gGCCGGCcugCUGCCgUacaccuacgcUUGCCGCCCu -3'
miRNA:   3'- gCGGCCGca-GGUGGgA----------AGCGGCGGGu -5'
26551 5' -64.2 NC_005357.1 + 19008 0.67 0.220252
Target:  5'- gGCCGGCGUCgCACugaCCggCG-CGCUCAu -3'
miRNA:   3'- gCGGCCGCAG-GUG---GGaaGCgGCGGGU- -5'
26551 5' -64.2 NC_005357.1 + 27024 0.67 0.220252
Target:  5'- uGCauCGGuCGUCCGgcaUCUUCGCCGgCCCGc -3'
miRNA:   3'- gCG--GCC-GCAGGUg--GGAAGCGGC-GGGU- -5'
26551 5' -64.2 NC_005357.1 + 6736 0.67 0.214754
Target:  5'- aGCaCGGCGUCgGCCU--UGgCGCCCc -3'
miRNA:   3'- gCG-GCCGCAGgUGGGaaGCgGCGGGu -5'
26551 5' -64.2 NC_005357.1 + 21753 0.67 0.212587
Target:  5'- gGCC-GCGUCCACauaggacagGCCGCCCGg -3'
miRNA:   3'- gCGGcCGCAGGUGggaag----CGGCGGGU- -5'
26551 5' -64.2 NC_005357.1 + 10528 0.67 0.209373
Target:  5'- cCGCCGGCca-CGCUUUcCGCCGCCa- -3'
miRNA:   3'- -GCGGCCGcagGUGGGAaGCGGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.