miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26556 3' -56 NC_005357.1 + 12468 0.66 0.565992
Target:  5'- aGGCCGucGUGCGC-CGCGACgACAaGCa- -3'
miRNA:   3'- -CUGGC--UACGUGcGCGUUGgUGU-CGaa -5'
26556 3' -56 NC_005357.1 + 31338 0.66 0.564871
Target:  5'- aGCCGAcaaggUGCucGCGCGCGACCcggacacguucgaGCAGUUc -3'
miRNA:   3'- cUGGCU-----ACG--UGCGCGUUGG-------------UGUCGAa -5'
26556 3' -56 NC_005357.1 + 15296 0.66 0.554803
Target:  5'- cGAgUGAUGCGCGCG--GCguCAGCUUu -3'
miRNA:   3'- -CUgGCUACGUGCGCguUGguGUCGAA- -5'
26556 3' -56 NC_005357.1 + 38666 0.66 0.554803
Target:  5'- cGACCGAgGCuACGUcCAGCgGCGGCa- -3'
miRNA:   3'- -CUGGCUaCG-UGCGcGUUGgUGUCGaa -5'
26556 3' -56 NC_005357.1 + 26250 0.66 0.554803
Target:  5'- cGCCGAagGCACGgGCAcCCGcCGGCc- -3'
miRNA:   3'- cUGGCUa-CGUGCgCGUuGGU-GUCGaa -5'
26556 3' -56 NC_005357.1 + 5392 0.66 0.551459
Target:  5'- cACUGGUGCGCGCcgcgagcaccuucuGCGuacgcuCCACGGCg- -3'
miRNA:   3'- cUGGCUACGUGCG--------------CGUu-----GGUGUCGaa -5'
26556 3' -56 NC_005357.1 + 32920 0.66 0.54812
Target:  5'- cGGCC--UGCACgGCugcuguucggccaggGCGACCACGGCUg -3'
miRNA:   3'- -CUGGcuACGUG-CG---------------CGUUGGUGUCGAa -5'
26556 3' -56 NC_005357.1 + 17882 0.66 0.54368
Target:  5'- cAUCGccGCGCuGCGCGACCAC-GCg- -3'
miRNA:   3'- cUGGCuaCGUG-CGCGUUGGUGuCGaa -5'
26556 3' -56 NC_005357.1 + 18975 0.66 0.54368
Target:  5'- cGCCGGcgUGUACGCGCgAACCAUccGCa- -3'
miRNA:   3'- cUGGCU--ACGUGCGCG-UUGGUGu-CGaa -5'
26556 3' -56 NC_005357.1 + 14732 0.66 0.540356
Target:  5'- aGCCGcUGCcgGCGCGCGgccuguauuccaagACCACGGUg- -3'
miRNA:   3'- cUGGCuACG--UGCGCGU--------------UGGUGUCGaa -5'
26556 3' -56 NC_005357.1 + 23255 0.66 0.53263
Target:  5'- cGCCGGcgGCACGgGCAGCgACAacGCa- -3'
miRNA:   3'- cUGGCUa-CGUGCgCGUUGgUGU--CGaa -5'
26556 3' -56 NC_005357.1 + 31259 0.66 0.53263
Target:  5'- cGGCCGAccagcGCACGCaacgugcgcagGCGGCCcaGCAGCa- -3'
miRNA:   3'- -CUGGCUa----CGUGCG-----------CGUUGG--UGUCGaa -5'
26556 3' -56 NC_005357.1 + 14600 0.66 0.524944
Target:  5'- cGGCCGGcgccaccgcgggcaGCGCGCGCGaggacguGCUGCGGCUg -3'
miRNA:   3'- -CUGGCUa-------------CGUGCGCGU-------UGGUGUCGAa -5'
26556 3' -56 NC_005357.1 + 391 0.66 0.521662
Target:  5'- uGAgCGcgGCcaGCGCGCGACUguugaGCAGCa- -3'
miRNA:   3'- -CUgGCuaCG--UGCGCGUUGG-----UGUCGaa -5'
26556 3' -56 NC_005357.1 + 3740 0.66 0.521662
Target:  5'- cGCCGGUgguggGCACGuCGguGCCGCcGCUg -3'
miRNA:   3'- cUGGCUA-----CGUGC-GCguUGGUGuCGAa -5'
26556 3' -56 NC_005357.1 + 34325 0.66 0.521662
Target:  5'- uGGCCGA-GCACGUGCAgaaguacaucgACUACGuGCg- -3'
miRNA:   3'- -CUGGCUaCGUGCGCGU-----------UGGUGU-CGaa -5'
26556 3' -56 NC_005357.1 + 34373 0.66 0.510783
Target:  5'- cGACCuggGCGCGCGUcaugGACgGCGGCa- -3'
miRNA:   3'- -CUGGcuaCGUGCGCG----UUGgUGUCGaa -5'
26556 3' -56 NC_005357.1 + 8296 0.66 0.510783
Target:  5'- uGCCGggGCA-GUGCAGCCAgCGGUg- -3'
miRNA:   3'- cUGGCuaCGUgCGCGUUGGU-GUCGaa -5'
26556 3' -56 NC_005357.1 + 9612 0.66 0.507538
Target:  5'- cGGCUGGUGUaguccgaccggcagACGCGCAGCaC-CAGCg- -3'
miRNA:   3'- -CUGGCUACG--------------UGCGCGUUG-GuGUCGaa -5'
26556 3' -56 NC_005357.1 + 32557 0.67 0.499999
Target:  5'- uGGCCGAgaaGCAgCGCGCcgguGCCAC-GCUc -3'
miRNA:   3'- -CUGGCUa--CGU-GCGCGu---UGGUGuCGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.