miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26556 5' -54.5 NC_005357.1 + 15470 1.13 0.000435
Target:  5'- cCGAAGCUGCCGUCCAGUUGCAUCGCCa -3'
miRNA:   3'- -GCUUCGACGGCAGGUCAACGUAGCGG- -5'
26556 5' -54.5 NC_005357.1 + 28854 0.72 0.361662
Target:  5'- cCGAAGCUGUcccagcgccgcgccaCGUCCucgcugcuggcguAGUUGCuggccGUCGCCg -3'
miRNA:   3'- -GCUUCGACG---------------GCAGG-------------UCAACG-----UAGCGG- -5'
26556 5' -54.5 NC_005357.1 + 12637 0.71 0.395172
Target:  5'- uCGcuGCUGCCGUCCuuuGgcgucggGuCGUCGCCc -3'
miRNA:   3'- -GCuuCGACGGCAGGu--Caa-----C-GUAGCGG- -5'
26556 5' -54.5 NC_005357.1 + 37208 0.7 0.433578
Target:  5'- gCGAA-CUGCUGgguaUCCGGUUGCAg-GCCa -3'
miRNA:   3'- -GCUUcGACGGC----AGGUCAACGUagCGG- -5'
26556 5' -54.5 NC_005357.1 + 322 0.7 0.463763
Target:  5'- -aGGGCgUGCCGUaCCGGggGUcgUGCCa -3'
miRNA:   3'- gcUUCG-ACGGCA-GGUCaaCGuaGCGG- -5'
26556 5' -54.5 NC_005357.1 + 14083 0.69 0.484485
Target:  5'- -uAGGgUGCCagaaauuucGUCCAGUUGCuucuugagguuAUCGCCg -3'
miRNA:   3'- gcUUCgACGG---------CAGGUCAACG-----------UAGCGG- -5'
26556 5' -54.5 NC_005357.1 + 11575 0.69 0.505639
Target:  5'- uCGAAGCcaUGCCGcCCAGggccgccgGCuggcCGCCg -3'
miRNA:   3'- -GCUUCG--ACGGCaGGUCaa------CGua--GCGG- -5'
26556 5' -54.5 NC_005357.1 + 39821 0.69 0.505639
Target:  5'- aCGAAGCUaaaGUCGuUCCGGUUGCAacagggCGgCa -3'
miRNA:   3'- -GCUUCGA---CGGC-AGGUCAACGUa-----GCgG- -5'
26556 5' -54.5 NC_005357.1 + 6661 0.69 0.505639
Target:  5'- cCGggGaaGCCGUCgUAGUUgGCcuugagGUCGCCa -3'
miRNA:   3'- -GCuuCgaCGGCAG-GUCAA-CG------UAGCGG- -5'
26556 5' -54.5 NC_005357.1 + 28018 0.69 0.516365
Target:  5'- gGAAGaaGCCGaUCAuGUcgGCGUCGCCg -3'
miRNA:   3'- gCUUCgaCGGCaGGU-CAa-CGUAGCGG- -5'
26556 5' -54.5 NC_005357.1 + 3932 0.68 0.526095
Target:  5'- ---cGCUGCCGUCCGcgauggucacGUUGUAUuugcuggUGCCa -3'
miRNA:   3'- gcuuCGACGGCAGGU----------CAACGUA-------GCGG- -5'
26556 5' -54.5 NC_005357.1 + 19711 0.68 0.52718
Target:  5'- gGAAGCUGCauagaGgcgCCGc--GCAUCGCCc -3'
miRNA:   3'- gCUUCGACGg----Ca--GGUcaaCGUAGCGG- -5'
26556 5' -54.5 NC_005357.1 + 274 0.68 0.52718
Target:  5'- uGAGGCacGgCGUCCAGUaGCugCGCCg -3'
miRNA:   3'- gCUUCGa-CgGCAGGUCAaCGuaGCGG- -5'
26556 5' -54.5 NC_005357.1 + 18266 0.68 0.53808
Target:  5'- cCGAAGCgcgcaGCCGUCgAGgcGCuggGCCa -3'
miRNA:   3'- -GCUUCGa----CGGCAGgUCaaCGuagCGG- -5'
26556 5' -54.5 NC_005357.1 + 14971 0.68 0.53808
Target:  5'- uGAAGUcGCCGgucgCCAGaaugGCGUCGgCa -3'
miRNA:   3'- gCUUCGaCGGCa---GGUCaa--CGUAGCgG- -5'
26556 5' -54.5 NC_005357.1 + 24572 0.68 0.544657
Target:  5'- gCGAGGCcggccacggucggGCCGUCCGGcgUGUccUUGCCg -3'
miRNA:   3'- -GCUUCGa------------CGGCAGGUCa-ACGu-AGCGG- -5'
26556 5' -54.5 NC_005357.1 + 16943 0.68 0.549056
Target:  5'- --cGGC-GCCGUCCAGcaGCGU-GCCg -3'
miRNA:   3'- gcuUCGaCGGCAGGUCaaCGUAgCGG- -5'
26556 5' -54.5 NC_005357.1 + 2448 0.68 0.5601
Target:  5'- cCGAAaCUGCgGcCCAGgcGC-UCGCCu -3'
miRNA:   3'- -GCUUcGACGgCaGGUCaaCGuAGCGG- -5'
26556 5' -54.5 NC_005357.1 + 29757 0.68 0.571205
Target:  5'- uCGGccucGGCUGCUG-CCAGgcGCGUgCGCg -3'
miRNA:   3'- -GCU----UCGACGGCaGGUCaaCGUA-GCGg -5'
26556 5' -54.5 NC_005357.1 + 9094 0.67 0.604797
Target:  5'- gGccGCgagGCCGUucuugCCGGUgggcagGUAUCGCCa -3'
miRNA:   3'- gCuuCGa--CGGCA-----GGUCAa-----CGUAGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.