Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26556 | 5' | -54.5 | NC_005357.1 | + | 448 | 0.66 | 0.661138 |
Target: 5'- -uGGGCUGCUGcgcggCCAGcUUGCGggCGCUg -3' miRNA: 3'- gcUUCGACGGCa----GGUC-AACGUa-GCGG- -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 16943 | 0.68 | 0.549056 |
Target: 5'- --cGGC-GCCGUCCAGcaGCGU-GCCg -3' miRNA: 3'- gcuUCGaCGGCAGGUCaaCGUAgCGG- -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 29757 | 0.68 | 0.571205 |
Target: 5'- uCGGccucGGCUGCUG-CCAGgcGCGUgCGCg -3' miRNA: 3'- -GCU----UCGACGGCaGGUCaaCGUA-GCGg -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 9094 | 0.67 | 0.604797 |
Target: 5'- gGccGCgagGCCGUucuugCCGGUgggcagGUAUCGCCa -3' miRNA: 3'- gCuuCGa--CGGCA-----GGUCAa-----CGUAGCGG- -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 25013 | 0.67 | 0.63861 |
Target: 5'- aCGAcagcgGGUUGCCGUCCgAGUcaaaccacgUGUcgCGCg -3' miRNA: 3'- -GCU-----UCGACGGCAGG-UCA---------ACGuaGCGg -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 19609 | 0.66 | 0.649882 |
Target: 5'- uCGAucUUGCCGUCCGGggucaUGCGg-GCCg -3' miRNA: 3'- -GCUucGACGGCAGGUCa----ACGUagCGG- -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 35372 | 0.66 | 0.649882 |
Target: 5'- aCGAcGCUGCCGcCCGag-GCcaugCGCCu -3' miRNA: 3'- -GCUuCGACGGCaGGUcaaCGua--GCGG- -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 10070 | 0.66 | 0.649882 |
Target: 5'- cCGAGGC-GUCGUCgGGgcgaGCcgUGCCa -3' miRNA: 3'- -GCUUCGaCGGCAGgUCaa--CGuaGCGG- -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 32665 | 0.66 | 0.660014 |
Target: 5'- gCGAAGCUGCCcgacgugaagcccGagCAGUucgccgacgUGC-UCGCCg -3' miRNA: 3'- -GCUUCGACGG-------------CagGUCA---------ACGuAGCGG- -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 24572 | 0.68 | 0.544657 |
Target: 5'- gCGAGGCcggccacggucggGCCGUCCGGcgUGUccUUGCCg -3' miRNA: 3'- -GCUUCGa------------CGGCAGGUCa-ACGu-AGCGG- -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 14971 | 0.68 | 0.53808 |
Target: 5'- uGAAGUcGCCGgucgCCAGaaugGCGUCGgCa -3' miRNA: 3'- gCUUCGaCGGCa---GGUCaa--CGUAGCgG- -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 19711 | 0.68 | 0.52718 |
Target: 5'- gGAAGCUGCauagaGgcgCCGc--GCAUCGCCc -3' miRNA: 3'- gCUUCGACGg----Ca--GGUcaaCGUAGCGG- -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 28854 | 0.72 | 0.361662 |
Target: 5'- cCGAAGCUGUcccagcgccgcgccaCGUCCucgcugcuggcguAGUUGCuggccGUCGCCg -3' miRNA: 3'- -GCUUCGACG---------------GCAGG-------------UCAACG-----UAGCGG- -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 12637 | 0.71 | 0.395172 |
Target: 5'- uCGcuGCUGCCGUCCuuuGgcgucggGuCGUCGCCc -3' miRNA: 3'- -GCuuCGACGGCAGGu--Caa-----C-GUAGCGG- -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 37208 | 0.7 | 0.433578 |
Target: 5'- gCGAA-CUGCUGgguaUCCGGUUGCAg-GCCa -3' miRNA: 3'- -GCUUcGACGGC----AGGUCAACGUagCGG- -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 14083 | 0.69 | 0.484485 |
Target: 5'- -uAGGgUGCCagaaauuucGUCCAGUUGCuucuugagguuAUCGCCg -3' miRNA: 3'- gcUUCgACGG---------CAGGUCAACG-----------UAGCGG- -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 11575 | 0.69 | 0.505639 |
Target: 5'- uCGAAGCcaUGCCGcCCAGggccgccgGCuggcCGCCg -3' miRNA: 3'- -GCUUCG--ACGGCaGGUCaa------CGua--GCGG- -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 39821 | 0.69 | 0.505639 |
Target: 5'- aCGAAGCUaaaGUCGuUCCGGUUGCAacagggCGgCa -3' miRNA: 3'- -GCUUCGA---CGGC-AGGUCAACGUa-----GCgG- -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 28018 | 0.69 | 0.516365 |
Target: 5'- gGAAGaaGCCGaUCAuGUcgGCGUCGCCg -3' miRNA: 3'- gCUUCgaCGGCaGGU-CAa-CGUAGCGG- -5' |
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26556 | 5' | -54.5 | NC_005357.1 | + | 3932 | 0.68 | 0.526095 |
Target: 5'- ---cGCUGCCGUCCGcgauggucacGUUGUAUuugcuggUGCCa -3' miRNA: 3'- gcuuCGACGGCAGGU----------CAACGUA-------GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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