miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26562 3' -59.1 NC_005357.1 + 18094 1.09 0.000364
Target:  5'- gCCGGCGCGAACCAGGACGCCUUCGCGc -3'
miRNA:   3'- -GGCCGCGCUUGGUCCUGCGGAAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 30636 0.8 0.056272
Target:  5'- gCCGGCGCGAAUgAGGGCGCagaccaaUUCGuCGg -3'
miRNA:   3'- -GGCCGCGCUUGgUCCUGCGg------AAGC-GC- -5'
26562 3' -59.1 NC_005357.1 + 35974 0.78 0.081271
Target:  5'- uCCuGCGCGA--CGGcGACGCCUUCGCGg -3'
miRNA:   3'- -GGcCGCGCUugGUC-CUGCGGAAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 34668 0.77 0.088397
Target:  5'- -aGGCGCGAGCCuGGAUuCCUUCGUc -3'
miRNA:   3'- ggCCGCGCUUGGuCCUGcGGAAGCGc -5'
26562 3' -59.1 NC_005357.1 + 38707 0.77 0.093475
Target:  5'- aCCGGCGUGAACgGcacGGGCGCCacgagCGCGu -3'
miRNA:   3'- -GGCCGCGCUUGgU---CCUGCGGaa---GCGC- -5'
26562 3' -59.1 NC_005357.1 + 41361 0.75 0.133789
Target:  5'- aCCGcGCGCGuuaCuGGACGCCgguUCGCGg -3'
miRNA:   3'- -GGC-CGCGCuugGuCCUGCGGa--AGCGC- -5'
26562 3' -59.1 NC_005357.1 + 7756 0.74 0.13748
Target:  5'- uUGGCGaCGAAggaauCCAGGcucGCGCCUUCGCc -3'
miRNA:   3'- gGCCGC-GCUU-----GGUCC---UGCGGAAGCGc -5'
26562 3' -59.1 NC_005357.1 + 4377 0.74 0.141264
Target:  5'- gCGGaUGCGcAGCCAGG-CGCCgUCGCGc -3'
miRNA:   3'- gGCC-GCGC-UUGGUCCuGCGGaAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 25052 0.73 0.166033
Target:  5'- gUCGGCGCGAugCAGGcAUaCCUgUCGCa -3'
miRNA:   3'- -GGCCGCGCUugGUCC-UGcGGA-AGCGc -5'
26562 3' -59.1 NC_005357.1 + 1716 0.72 0.19463
Target:  5'- gCCGGCGUGccGGCgAGGGCGUCcaaguccUCGCGg -3'
miRNA:   3'- -GGCCGCGC--UUGgUCCUGCGGa------AGCGC- -5'
26562 3' -59.1 NC_005357.1 + 26133 0.72 0.199274
Target:  5'- cCCGuGCGCGAcgacgaccggguaGCCuuccGGGugGCCgcgCGCGa -3'
miRNA:   3'- -GGC-CGCGCU-------------UGG----UCCugCGGaa-GCGC- -5'
26562 3' -59.1 NC_005357.1 + 30881 0.72 0.205081
Target:  5'- aCCGGCGgGcaguccuAUCAGGAUGCCcgcUCGCa -3'
miRNA:   3'- -GGCCGCgCu------UGGUCCUGCGGa--AGCGc -5'
26562 3' -59.1 NC_005357.1 + 8447 0.71 0.221666
Target:  5'- aUCGGCGCGAugUcggcgucgAGGugGCCUgcgaugcCGCa -3'
miRNA:   3'- -GGCCGCGCUugG--------UCCugCGGAa------GCGc -5'
26562 3' -59.1 NC_005357.1 + 37045 0.71 0.227444
Target:  5'- gCGGCGCGcACCAGuGACauaacCCUgggCGCGg -3'
miRNA:   3'- gGCCGCGCuUGGUC-CUGc----GGAa--GCGC- -5'
26562 3' -59.1 NC_005357.1 + 7771 0.71 0.227444
Target:  5'- aCCGGCGCGAucugcGCCGGcGuccAC-CCUUCGCc -3'
miRNA:   3'- -GGCCGCGCU-----UGGUC-C---UGcGGAAGCGc -5'
26562 3' -59.1 NC_005357.1 + 12824 0.71 0.233348
Target:  5'- cCCGGCGCuGGACaacuGGcaaaccgcGCGCCUgggCGCGg -3'
miRNA:   3'- -GGCCGCG-CUUGgu--CC--------UGCGGAa--GCGC- -5'
26562 3' -59.1 NC_005357.1 + 36080 0.71 0.233348
Target:  5'- cCCGGCcuuCGGGCCGGG-CGCUUUgGCu -3'
miRNA:   3'- -GGCCGc--GCUUGGUCCuGCGGAAgCGc -5'
26562 3' -59.1 NC_005357.1 + 1884 0.71 0.239381
Target:  5'- gCCGGCGCuGGCCGGGugGgCgaacagcaGCGg -3'
miRNA:   3'- -GGCCGCGcUUGGUCCugCgGaag-----CGC- -5'
26562 3' -59.1 NC_005357.1 + 35248 0.71 0.239381
Target:  5'- cCCGGCuGCG--UCAGGGCGUCagCGCGu -3'
miRNA:   3'- -GGCCG-CGCuuGGUCCUGCGGaaGCGC- -5'
26562 3' -59.1 NC_005357.1 + 10321 0.71 0.251837
Target:  5'- gUCGGCaGCG-GCCAGGGCGUUgagcaaCGCGg -3'
miRNA:   3'- -GGCCG-CGCuUGGUCCUGCGGaa----GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.