miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26562 3' -59.1 NC_005357.1 + 38044 0.68 0.345984
Target:  5'- cCCGGCGCGAc----GGCGCCUggcugCGCa -3'
miRNA:   3'- -GGCCGCGCUuggucCUGCGGAa----GCGc -5'
26562 3' -59.1 NC_005357.1 + 20317 0.69 0.307027
Target:  5'- gCCGGuUGCGAugCGGGcugGCCUUCaGUGg -3'
miRNA:   3'- -GGCC-GCGCUugGUCCug-CGGAAG-CGC- -5'
26562 3' -59.1 NC_005357.1 + 23423 0.69 0.322195
Target:  5'- gCCGGUcaguGCGAcgccgGCCGGGAUGCggauggUUCGCGc -3'
miRNA:   3'- -GGCCG----CGCU-----UGGUCCUGCGg-----AAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 42149 0.69 0.322195
Target:  5'- uCCGGCGC-AGCUAcuGGACGCCgugccucaagCGCc -3'
miRNA:   3'- -GGCCGCGcUUGGU--CCUGCGGaa--------GCGc -5'
26562 3' -59.1 NC_005357.1 + 4671 0.69 0.329987
Target:  5'- uUGGCGgGcACCAGcGCGCCggauagCGCGg -3'
miRNA:   3'- gGCCGCgCuUGGUCcUGCGGaa----GCGC- -5'
26562 3' -59.1 NC_005357.1 + 9733 0.69 0.329987
Target:  5'- gCCGcGgGCGAACUgcucgugguGGGCGCgCUUCGCc -3'
miRNA:   3'- -GGC-CgCGCUUGGu--------CCUGCG-GAAGCGc -5'
26562 3' -59.1 NC_005357.1 + 28721 0.69 0.329987
Target:  5'- gUCGGCGCacGCgAGGaugaGCGCCUUgGCa -3'
miRNA:   3'- -GGCCGCGcuUGgUCC----UGCGGAAgCGc -5'
26562 3' -59.1 NC_005357.1 + 3852 0.69 0.337917
Target:  5'- cUCGGCGaaguuguACCAGG-CGCCgUCGCu -3'
miRNA:   3'- -GGCCGCgcu----UGGUCCuGCGGaAGCGc -5'
26562 3' -59.1 NC_005357.1 + 37275 0.68 0.345984
Target:  5'- -gGGCGUGAGCagcgacGGcCGCCUgCGCGg -3'
miRNA:   3'- ggCCGCGCUUGgu----CCuGCGGAaGCGC- -5'
26562 3' -59.1 NC_005357.1 + 25322 0.69 0.29965
Target:  5'- aCCGGCGCucgucGCCGGGAUuguccaggccgGCCagUUCGCa -3'
miRNA:   3'- -GGCCGCGcu---UGGUCCUG-----------CGG--AAGCGc -5'
26562 3' -59.1 NC_005357.1 + 24648 0.69 0.29965
Target:  5'- gCCGGCG--GGCCAGGAUGgUguugUCGCGc -3'
miRNA:   3'- -GGCCGCgcUUGGUCCUGCgGa---AGCGC- -5'
26562 3' -59.1 NC_005357.1 + 34499 0.7 0.278344
Target:  5'- gUGGCGUGAAgguGGACGCCgagCGCa -3'
miRNA:   3'- gGCCGCGCUUgguCCUGCGGaa-GCGc -5'
26562 3' -59.1 NC_005357.1 + 30636 0.8 0.056272
Target:  5'- gCCGGCGCGAAUgAGGGCGCagaccaaUUCGuCGg -3'
miRNA:   3'- -GGCCGCGCUUGgUCCUGCGg------AAGC-GC- -5'
26562 3' -59.1 NC_005357.1 + 35974 0.78 0.081271
Target:  5'- uCCuGCGCGA--CGGcGACGCCUUCGCGg -3'
miRNA:   3'- -GGcCGCGCUugGUC-CUGCGGAAGCGC- -5'
26562 3' -59.1 NC_005357.1 + 34668 0.77 0.088397
Target:  5'- -aGGCGCGAGCCuGGAUuCCUUCGUc -3'
miRNA:   3'- ggCCGCGCUUGGuCCUGcGGAAGCGc -5'
26562 3' -59.1 NC_005357.1 + 1716 0.72 0.19463
Target:  5'- gCCGGCGUGccGGCgAGGGCGUCcaaguccUCGCGg -3'
miRNA:   3'- -GGCCGCGC--UUGgUCCUGCGGa------AGCGC- -5'
26562 3' -59.1 NC_005357.1 + 7771 0.71 0.227444
Target:  5'- aCCGGCGCGAucugcGCCGGcGuccAC-CCUUCGCc -3'
miRNA:   3'- -GGCCGCGCU-----UGGUC-C---UGcGGAAGCGc -5'
26562 3' -59.1 NC_005357.1 + 37045 0.71 0.227444
Target:  5'- gCGGCGCGcACCAGuGACauaacCCUgggCGCGg -3'
miRNA:   3'- gGCCGCGCuUGGUC-CUGc----GGAa--GCGC- -5'
26562 3' -59.1 NC_005357.1 + 36080 0.71 0.233348
Target:  5'- cCCGGCcuuCGGGCCGGG-CGCUUUgGCu -3'
miRNA:   3'- -GGCCGc--GCUUGGUCCuGCGGAAgCGc -5'
26562 3' -59.1 NC_005357.1 + 9874 0.7 0.264821
Target:  5'- aCCGGCGCGcugcuucucGGCCAGG-CGCgUg-GCGa -3'
miRNA:   3'- -GGCCGCGC---------UUGGUCCuGCGgAagCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.