Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26562 | 3' | -59.1 | NC_005357.1 | + | 24328 | 0.66 | 0.453113 |
Target: 5'- aCGGCGCGAAggcguCCuGGuucGCGCCggcUUCgGCGg -3' miRNA: 3'- gGCCGCGCUU-----GGuCC---UGCGG---AAG-CGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 34318 | 0.66 | 0.452146 |
Target: 5'- gCCGGCcgcGCGGugCAGGgccucaaACGCUUUUGgGc -3' miRNA: 3'- -GGCCG---CGCUugGUCC-------UGCGGAAGCgC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 14319 | 0.67 | 0.444456 |
Target: 5'- aCUGGCGCGcgccuuggcugaacuGCCGGGcCuGCUggUUCGCGg -3' miRNA: 3'- -GGCCGCGCu--------------UGGUCCuG-CGG--AAGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 31975 | 0.67 | 0.4435 |
Target: 5'- uCCaGgGCGAcGCCaAGGGCGCCaUUGCc -3' miRNA: 3'- -GGcCgCGCU-UGG-UCCUGCGGaAGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 12889 | 0.67 | 0.4435 |
Target: 5'- aCGGCGUGGguguccucugcgGCCAGGGggcacaGCCUgucgUCGCc -3' miRNA: 3'- gGCCGCGCU------------UGGUCCUg-----CGGA----AGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 7057 | 0.67 | 0.440638 |
Target: 5'- aCCGGgGCG-GCCAGGuacuucaugACGCCgcggccuacccacggCGCGc -3' miRNA: 3'- -GGCCgCGCuUGGUCC---------UGCGGaa-------------GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 40959 | 0.67 | 0.434003 |
Target: 5'- cCCGGCcu--GCCAGGAgGCCgccgacCGCGc -3' miRNA: 3'- -GGCCGcgcuUGGUCCUgCGGaa----GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 24141 | 0.67 | 0.434003 |
Target: 5'- gCCGGCuGCGcGCCuGGcccaGCGCCU-CGaCGg -3' miRNA: 3'- -GGCCG-CGCuUGGuCC----UGCGGAaGC-GC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 454 | 0.67 | 0.434003 |
Target: 5'- gCuGCGCG-GCCAgcuugcGGGCGCUgUCGCGg -3' miRNA: 3'- gGcCGCGCuUGGU------CCUGCGGaAGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 17691 | 0.67 | 0.434003 |
Target: 5'- -aGGCGaagcgccacuCGGGCCGGGAaaUGCCcaUCGCGg -3' miRNA: 3'- ggCCGC----------GCUUGGUCCU--GCGGa-AGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 20634 | 0.67 | 0.43306 |
Target: 5'- gCCGGUGUccgccaaGAACCAGGACaucagcaccguGCCgg-GCGg -3' miRNA: 3'- -GGCCGCG-------CUUGGUCCUG-----------CGGaagCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 29392 | 0.67 | 0.424625 |
Target: 5'- cUCGGCGCGGuagGCCAgcagaaucuuGGGCGCgUUgcccaCGCGc -3' miRNA: 3'- -GGCCGCGCU---UGGU----------CCUGCGgAA-----GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 3254 | 0.67 | 0.424625 |
Target: 5'- cCCGGCGgGAuucagcuuccgcGCCAGauagucGGCccguGCCUUUGCGa -3' miRNA: 3'- -GGCCGCgCU------------UGGUC------CUG----CGGAAGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 17112 | 0.67 | 0.424625 |
Target: 5'- cCCGGCGaCGAgcGCCGGuGGCaggGCCggcCGCa -3' miRNA: 3'- -GGCCGC-GCU--UGGUC-CUG---CGGaa-GCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 40409 | 0.67 | 0.424625 |
Target: 5'- gCCuGCGCGAcuucGCCAGcGAgCGCCUggGCc -3' miRNA: 3'- -GGcCGCGCU----UGGUC-CU-GCGGAagCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 19559 | 0.67 | 0.424625 |
Target: 5'- aCC-GCGCGAACCAGaagcaGCCcaaUUCGCa -3' miRNA: 3'- -GGcCGCGCUUGGUCcug--CGG---AAGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 27455 | 0.67 | 0.424625 |
Target: 5'- cCUGGCGCuGGuauGCCAGcGCGCCg-CGCa -3' miRNA: 3'- -GGCCGCG-CU---UGGUCcUGCGGaaGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 9575 | 0.67 | 0.415369 |
Target: 5'- cUCGGCGcCGAccgucugcgGCCAGGcgaaGCCgUUGCGg -3' miRNA: 3'- -GGCCGC-GCU---------UGGUCCug--CGGaAGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 40700 | 0.67 | 0.415369 |
Target: 5'- aCCcGCGaGGACUuGGACGCCcUCGCc -3' miRNA: 3'- -GGcCGCgCUUGGuCCUGCGGaAGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 1750 | 0.67 | 0.415369 |
Target: 5'- aCCGG-GCGGucaugGCCGGccuGCGCCUggCGCGu -3' miRNA: 3'- -GGCCgCGCU-----UGGUCc--UGCGGAa-GCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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