Results 41 - 60 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26562 | 3' | -59.1 | NC_005357.1 | + | 9628 | 0.67 | 0.409876 |
Target: 5'- aCCGGCagacgcgcagcaccaGCGAgguGCCgAGGGCGgaCUUCGCc -3' miRNA: 3'- -GGCCG---------------CGCU---UGG-UCCUGCg-GAAGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 23282 | 0.67 | 0.406238 |
Target: 5'- gUCGGCGUGcGCCAcGaAUGCCUguUUGCGg -3' miRNA: 3'- -GGCCGCGCuUGGUcC-UGCGGA--AGCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 6355 | 0.67 | 0.402621 |
Target: 5'- cCCGGCcCGAagGCCGGGGCGCUggguuacaccaggUCGg- -3' miRNA: 3'- -GGCCGcGCU--UGGUCCUGCGGa------------AGCgc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 17062 | 0.67 | 0.397234 |
Target: 5'- uCUGGCGCcuGCCcGGugGCCggcuaUGCGa -3' miRNA: 3'- -GGCCGCGcuUGGuCCugCGGaa---GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 28407 | 0.67 | 0.397234 |
Target: 5'- gCGGCGCGGcGCCAGuaGAUGCCUguccagGUGa -3' miRNA: 3'- gGCCGCGCU-UGGUC--CUGCGGAag----CGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 690 | 0.67 | 0.397234 |
Target: 5'- gCGGCGCcGGCCGGGcCGCCcaagauacCGCc -3' miRNA: 3'- gGCCGCGcUUGGUCCuGCGGaa------GCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 11429 | 0.68 | 0.38836 |
Target: 5'- gCCGGCGUG---CAGGuCGCCgauaaggCGCGa -3' miRNA: 3'- -GGCCGCGCuugGUCCuGCGGaa-----GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 23471 | 0.68 | 0.385723 |
Target: 5'- gCCGGCGUGGAaCAGGuGCGCCgugggaaucucgaccUGCGg -3' miRNA: 3'- -GGCCGCGCUUgGUCC-UGCGGaa-------------GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 5442 | 0.68 | 0.383098 |
Target: 5'- gCGGCGUGGGCgAGGucgguaucgaccaucACGCCgcggUCGUu -3' miRNA: 3'- gGCCGCGCUUGgUCC---------------UGCGGa---AGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 7936 | 0.68 | 0.379616 |
Target: 5'- aCCGGCGCGAggauuuccgacaGCUugcccGugGCCUcggCGCGc -3' miRNA: 3'- -GGCCGCGCU------------UGGuc---CugCGGAa--GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 13082 | 0.68 | 0.377019 |
Target: 5'- aCCGGCGCGugguucgaggacuuGGCCGGcGAcCGCCacCGCc -3' miRNA: 3'- -GGCCGCGC--------------UUGGUC-CU-GCGGaaGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 16392 | 0.68 | 0.371006 |
Target: 5'- cCCGccGCGCGGGCUuuGAUGCCaUCGCc -3' miRNA: 3'- -GGC--CGCGCUUGGucCUGCGGaAGCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 9009 | 0.68 | 0.354189 |
Target: 5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3' miRNA: 3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 9057 | 0.68 | 0.354189 |
Target: 5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3' miRNA: 3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 9201 | 0.68 | 0.354189 |
Target: 5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3' miRNA: 3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 9153 | 0.68 | 0.354189 |
Target: 5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3' miRNA: 3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 9105 | 0.68 | 0.354189 |
Target: 5'- gCCGuGcCGCGAuaGCCAgcGGugGCCgugcCGCGa -3' miRNA: 3'- -GGC-C-GCGCU--UGGU--CCugCGGaa--GCGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 40915 | 0.68 | 0.345984 |
Target: 5'- -gGGCGCGAAUaagGGGGCGCCaugUC-CGa -3' miRNA: 3'- ggCCGCGCUUGg--UCCUGCGGa--AGcGC- -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 38044 | 0.68 | 0.345984 |
Target: 5'- cCCGGCGCGAc----GGCGCCUggcugCGCa -3' miRNA: 3'- -GGCCGCGCUuggucCUGCGGAa----GCGc -5' |
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26562 | 3' | -59.1 | NC_005357.1 | + | 37275 | 0.68 | 0.345984 |
Target: 5'- -gGGCGUGAGCagcgacGGcCGCCUgCGCGg -3' miRNA: 3'- ggCCGCGCUUGgu----CCuGCGGAaGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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