miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26564 5' -51.2 NC_005357.1 + 5245 0.66 0.879123
Target:  5'- -gCAGUUCGGccgGCAgGUCgGgGUcGGCa -3'
miRNA:   3'- caGUCAAGCC---UGUgCAGgUgUAaCCG- -5'
26564 5' -51.2 NC_005357.1 + 25622 0.66 0.879123
Target:  5'- -gCGGcgCGGucgccagcaGCGCGUCCACcucGGCg -3'
miRNA:   3'- caGUCaaGCC---------UGUGCAGGUGuaaCCG- -5'
26564 5' -51.2 NC_005357.1 + 11379 0.66 0.871
Target:  5'- ---uGUUCGGGCcuuCG-CgCACGUUGGCc -3'
miRNA:   3'- caguCAAGCCUGu--GCaG-GUGUAACCG- -5'
26564 5' -51.2 NC_005357.1 + 24425 0.66 0.862606
Target:  5'- --aGGUUCGGACGacaaGUCCgGCGgcgacUUGGUg -3'
miRNA:   3'- cagUCAAGCCUGUg---CAGG-UGU-----AACCG- -5'
26564 5' -51.2 NC_005357.1 + 16055 0.66 0.862606
Target:  5'- -cCAGUUCGcGCACGUggccgCCGCGcgcGGCg -3'
miRNA:   3'- caGUCAAGCcUGUGCA-----GGUGUaa-CCG- -5'
26564 5' -51.2 NC_005357.1 + 24619 0.66 0.85395
Target:  5'- gGUCAG--CGG-CACGUcgaaCCACAU-GGCg -3'
miRNA:   3'- -CAGUCaaGCCuGUGCA----GGUGUAaCCG- -5'
26564 5' -51.2 NC_005357.1 + 35440 0.66 0.84504
Target:  5'- aUCGGgcgCGGACGCGcuUCCGCgaacucaacgaGUUGcGCa -3'
miRNA:   3'- cAGUCaa-GCCUGUGC--AGGUG-----------UAAC-CG- -5'
26564 5' -51.2 NC_005357.1 + 23686 0.66 0.839577
Target:  5'- gGUCGGgcCGGACACGUacaggccgguagcgcCCAgGUcgcgGGCc -3'
miRNA:   3'- -CAGUCaaGCCUGUGCA---------------GGUgUAa---CCG- -5'
26564 5' -51.2 NC_005357.1 + 21284 0.66 0.835887
Target:  5'- -cCAGggcgCGGACACGgcggCCAagcugGGCa -3'
miRNA:   3'- caGUCaa--GCCUGUGCa---GGUguaa-CCG- -5'
26564 5' -51.2 NC_005357.1 + 29208 0.67 0.826499
Target:  5'- -gCAGgUCGGACGCG--CGCAU-GGCg -3'
miRNA:   3'- caGUCaAGCCUGUGCagGUGUAaCCG- -5'
26564 5' -51.2 NC_005357.1 + 6874 0.67 0.826499
Target:  5'- -cCAcgUCGG-CACGUCCACcAUcugcUGGCa -3'
miRNA:   3'- caGUcaAGCCuGUGCAGGUG-UA----ACCG- -5'
26564 5' -51.2 NC_005357.1 + 9441 0.67 0.816888
Target:  5'- cGUCG--UUGGuCGCGUCCACGccgagGGCc -3'
miRNA:   3'- -CAGUcaAGCCuGUGCAGGUGUaa---CCG- -5'
26564 5' -51.2 NC_005357.1 + 14571 0.67 0.797042
Target:  5'- --gAGcgCGGACACGUUCuugaGCAgcGGCg -3'
miRNA:   3'- cagUCaaGCCUGUGCAGG----UGUaaCCG- -5'
26564 5' -51.2 NC_005357.1 + 5223 0.67 0.78683
Target:  5'- cGUCgAGgaugUUGGACgccacgguguugACGUUgGCGUUGGCa -3'
miRNA:   3'- -CAG-UCa---AGCCUG------------UGCAGgUGUAACCG- -5'
26564 5' -51.2 NC_005357.1 + 21600 0.68 0.776443
Target:  5'- gGUCAucugCGGAUugGUgC-CGUUGGCg -3'
miRNA:   3'- -CAGUcaa-GCCUGugCAgGuGUAACCG- -5'
26564 5' -51.2 NC_005357.1 + 18400 0.68 0.733394
Target:  5'- -cCGGUggCGGcCACGUCgGCGaaggUGGCg -3'
miRNA:   3'- caGUCAa-GCCuGUGCAGgUGUa---ACCG- -5'
26564 5' -51.2 NC_005357.1 + 29487 0.69 0.699896
Target:  5'- -cCAGUuccgcgUCGGuCGUGUCCACGUcaaUGGCg -3'
miRNA:   3'- caGUCA------AGCCuGUGCAGGUGUA---ACCG- -5'
26564 5' -51.2 NC_005357.1 + 19864 0.7 0.665751
Target:  5'- gGUgAGUUCGGGCgugccgaagGCGUCgCGCGccuucUUGGCc -3'
miRNA:   3'- -CAgUCAAGCCUG---------UGCAG-GUGU-----AACCG- -5'
26564 5' -51.2 NC_005357.1 + 21743 0.71 0.58541
Target:  5'- cGUUGGgcgCGGcCGCGUCCACAUaGGa -3'
miRNA:   3'- -CAGUCaa-GCCuGUGCAGGUGUAaCCg -5'
26564 5' -51.2 NC_005357.1 + 15371 0.73 0.464334
Target:  5'- uUCAccUCGGugaGCGCGUCCGCGUgcgGGCc -3'
miRNA:   3'- cAGUcaAGCC---UGUGCAGGUGUAa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.