miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2657 3' -55.1 NC_001491.2 + 51306 0.66 0.950027
Target:  5'- cGCCUuCGCGGcucUGccGGCCCcGCUCUUGGc -3'
miRNA:   3'- -CGGA-GCGUCu--AC--UUGGGaUGGGAGCC- -5'
2657 3' -55.1 NC_001491.2 + 11947 0.66 0.950027
Target:  5'- aCCUCGCuGGGUGcgacggggaaguAGCCCUGgggaCCUUGGc -3'
miRNA:   3'- cGGAGCG-UCUAC------------UUGGGAUg---GGAGCC- -5'
2657 3' -55.1 NC_001491.2 + 84252 0.66 0.948772
Target:  5'- aCCUagaggCGCAGAUcacagcgcuagucgGAGCCCUGgCCgCGGa -3'
miRNA:   3'- cGGA-----GCGUCUA--------------CUUGGGAUgGGaGCC- -5'
2657 3' -55.1 NC_001491.2 + 81450 0.66 0.945762
Target:  5'- uGCCaaaGUAGcUGAuGCCCUggcgGCCCUCGa -3'
miRNA:   3'- -CGGag-CGUCuACU-UGGGA----UGGGAGCc -5'
2657 3' -55.1 NC_001491.2 + 24781 0.66 0.945762
Target:  5'- cGUgaCGUGGAUgGAACgCCUACUCUgGGg -3'
miRNA:   3'- -CGgaGCGUCUA-CUUG-GGAUGGGAgCC- -5'
2657 3' -55.1 NC_001491.2 + 33789 0.66 0.941265
Target:  5'- uCCUCGgGGAcucUG-ACCCUACCCa--- -3'
miRNA:   3'- cGGAGCgUCU---ACuUGGGAUGGGagcc -5'
2657 3' -55.1 NC_001491.2 + 10537 0.66 0.936534
Target:  5'- cGCC-CGCGGccGcaagcuCCCUcuccagcuGCCCUCGGc -3'
miRNA:   3'- -CGGaGCGUCuaCuu----GGGA--------UGGGAGCC- -5'
2657 3' -55.1 NC_001491.2 + 133018 0.66 0.936534
Target:  5'- -aCUCGCGGAgUGGGCCCgcGCCagcaaauagauUUCGGa -3'
miRNA:   3'- cgGAGCGUCU-ACUUGGGa-UGG-----------GAGCC- -5'
2657 3' -55.1 NC_001491.2 + 147712 0.66 0.936534
Target:  5'- gGCCUgGCAGGguccGGCCCgcgucagcCCCUaCGGg -3'
miRNA:   3'- -CGGAgCGUCUac--UUGGGau------GGGA-GCC- -5'
2657 3' -55.1 NC_001491.2 + 33325 0.66 0.936534
Target:  5'- cGCCUaCGCGGAcauGgCCUACCCgagagacgaggCGGg -3'
miRNA:   3'- -CGGA-GCGUCUacuUgGGAUGGGa----------GCC- -5'
2657 3' -55.1 NC_001491.2 + 111315 0.66 0.936534
Target:  5'- cCCUCGCAcuguauUGAACCC--CCCUCa- -3'
miRNA:   3'- cGGAGCGUcu----ACUUGGGauGGGAGcc -5'
2657 3' -55.1 NC_001491.2 + 145291 0.66 0.931566
Target:  5'- --aUCGUcgGGA--AGCCCUACCCUCGc -3'
miRNA:   3'- cggAGCG--UCUacUUGGGAUGGGAGCc -5'
2657 3' -55.1 NC_001491.2 + 2553 0.67 0.91172
Target:  5'- gGCCUCGgGGAacagcugguugucgaUGAGCUCcGCCaccagCUCGGg -3'
miRNA:   3'- -CGGAGCgUCU---------------ACUUGGGaUGG-----GAGCC- -5'
2657 3' -55.1 NC_001491.2 + 3779 0.67 0.909326
Target:  5'- cGCUUCGCGGAcgcgGAccgagggcGCCggGgCCUCGGg -3'
miRNA:   3'- -CGGAGCGUCUa---CU--------UGGgaUgGGAGCC- -5'
2657 3' -55.1 NC_001491.2 + 35807 0.67 0.90255
Target:  5'- aGCCcCGCGGGUcgacuggGAGCCCggguucgGCUCUCGc -3'
miRNA:   3'- -CGGaGCGUCUA-------CUUGGGa------UGGGAGCc -5'
2657 3' -55.1 NC_001491.2 + 56867 0.68 0.890188
Target:  5'- gGCCcgCGCAGA--AACCCacACCCUUGa -3'
miRNA:   3'- -CGGa-GCGUCUacUUGGGa-UGGGAGCc -5'
2657 3' -55.1 NC_001491.2 + 2648 0.68 0.877014
Target:  5'- aGUCUcCGCGGGgaacgcgccUGAAUCCgccccgacggucgggGCCCUCGGc -3'
miRNA:   3'- -CGGA-GCGUCU---------ACUUGGGa--------------UGGGAGCC- -5'
2657 3' -55.1 NC_001491.2 + 145141 0.68 0.876299
Target:  5'- cGCgUCgGCGGAUGaAACCCUAUCUU-GGu -3'
miRNA:   3'- -CGgAG-CGUCUAC-UUGGGAUGGGAgCC- -5'
2657 3' -55.1 NC_001491.2 + 134422 0.68 0.876299
Target:  5'- uCCUCGCuAGAUGAuUCCUcGCCggCGGg -3'
miRNA:   3'- cGGAGCG-UCUACUuGGGA-UGGgaGCC- -5'
2657 3' -55.1 NC_001491.2 + 2979 0.69 0.82118
Target:  5'- gGCCUucUGCGGcUGGGCUgCUGCCCcCGGg -3'
miRNA:   3'- -CGGA--GCGUCuACUUGG-GAUGGGaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.