Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26570 | 3' | -53.5 | NC_005357.1 | + | 9161 | 0.73 | 0.351442 |
Target: 5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3' miRNA: 3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5' |
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26570 | 3' | -53.5 | NC_005357.1 | + | 9113 | 0.73 | 0.351442 |
Target: 5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3' miRNA: 3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5' |
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26570 | 3' | -53.5 | NC_005357.1 | + | 9065 | 0.73 | 0.351442 |
Target: 5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3' miRNA: 3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5' |
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26570 | 3' | -53.5 | NC_005357.1 | + | 9017 | 0.73 | 0.351442 |
Target: 5'- gCGAUagccaGCGGUggCCGUGCCGCGauaGCc -3' miRNA: 3'- -GCUAa----CGCCAaaGGUACGGCGCg--UGu -5' |
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26570 | 3' | -53.5 | NC_005357.1 | + | 8946 | 0.72 | 0.360222 |
Target: 5'- gGAUUcgccaGCGGUggCCGUGCCGCGauaGCc -3' miRNA: 3'- gCUAA-----CGCCAaaGGUACGGCGCg--UGu -5' |
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26570 | 3' | -53.5 | NC_005357.1 | + | 8665 | 0.76 | 0.219533 |
Target: 5'- ----cGCGGUcggcaUUgCGUGCCGCGCGCAc -3' miRNA: 3'- gcuaaCGCCA-----AAgGUACGGCGCGUGU- -5' |
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26570 | 3' | -53.5 | NC_005357.1 | + | 7978 | 0.69 | 0.564014 |
Target: 5'- ----cGCaucgGGUUUCCAUGUCGcCGCGCu -3' miRNA: 3'- gcuaaCG----CCAAAGGUACGGC-GCGUGu -5' |
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26570 | 3' | -53.5 | NC_005357.1 | + | 3742 | 0.66 | 0.744123 |
Target: 5'- cCGGUgGUGGgcacgUCgGUGCCGcCGCugGa -3' miRNA: 3'- -GCUAaCGCCaa---AGgUACGGC-GCGugU- -5' |
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26570 | 3' | -53.5 | NC_005357.1 | + | 3126 | 0.69 | 0.519704 |
Target: 5'- aGcgUGCGGUUUCUgaAUGCcCGCgagaaaGCGCAa -3' miRNA: 3'- gCuaACGCCAAAGG--UACG-GCG------CGUGU- -5' |
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26570 | 3' | -53.5 | NC_005357.1 | + | 1092 | 0.69 | 0.564014 |
Target: 5'- aGAUUGCcuuggCCGUGUCGCGCGgCAu -3' miRNA: 3'- gCUAACGccaaaGGUACGGCGCGU-GU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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