miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26570 5' -68 NC_005357.1 + 24087 1.06 0.000072
Target:  5'- gACCGCGCGGGGCACGGGCACCCCGCUa -3'
miRNA:   3'- -UGGCGCGCCCCGUGCCCGUGGGGCGA- -5'
26570 5' -68 NC_005357.1 + 4036 0.66 0.164832
Target:  5'- uGCCGCGCGGGucgagcGCAgcCGGGCGgaacuugauguCCCacagGCUg -3'
miRNA:   3'- -UGGCGCGCCC------CGU--GCCCGU-----------GGGg---CGA- -5'
26570 5' -68 NC_005357.1 + 37291 0.66 0.160647
Target:  5'- gGCCGCcuGCGcGGCACGuugcaguucaacGGCGCCagCCGCa -3'
miRNA:   3'- -UGGCG--CGCcCCGUGC------------CCGUGG--GGCGa -5'
26570 5' -68 NC_005357.1 + 18062 0.66 0.160647
Target:  5'- uACCgGCGCGGGGUGCGuGCuggGCCgCCGa- -3'
miRNA:   3'- -UGG-CGCGCCCCGUGCcCG---UGG-GGCga -5'
26570 5' -68 NC_005357.1 + 8120 0.67 0.135357
Target:  5'- cACCGCGCGgccggcguugguuguGGGCguGCGGGUGucggcgcugcguCCCUGCg -3'
miRNA:   3'- -UGGCGCGC---------------CCCG--UGCCCGU------------GGGGCGa -5'
26570 5' -68 NC_005357.1 + 3740 0.67 0.133948
Target:  5'- cGCCG-GUGguGGGCACGucGGUGCCgCCGCUg -3'
miRNA:   3'- -UGGCgCGC--CCCGUGC--CCGUGG-GGCGA- -5'
26570 5' -68 NC_005357.1 + 39342 0.67 0.130485
Target:  5'- uGCCGCGUGucgaaGGGCAUGGGUgcgGCUCgggCGCUu -3'
miRNA:   3'- -UGGCGCGC-----CCCGUGCCCG---UGGG---GCGA- -5'
26570 5' -68 NC_005357.1 + 36091 0.67 0.130485
Target:  5'- gGCCGgGCGcuuuGGCugGGGCggaacGCgCCGCg -3'
miRNA:   3'- -UGGCgCGCc---CCGugCCCG-----UGgGGCGa -5'
26570 5' -68 NC_005357.1 + 26048 0.67 0.127105
Target:  5'- cCCGCGCGgcGGGCGCGcuccauGCGCUCgGCg -3'
miRNA:   3'- uGGCGCGC--CCCGUGCc-----CGUGGGgCGa -5'
26570 5' -68 NC_005357.1 + 6161 0.67 0.117445
Target:  5'- --gGgGUGaGGCACGGGCACCCUuaGCg -3'
miRNA:   3'- uggCgCGCcCCGUGCCCGUGGGG--CGa -5'
26570 5' -68 NC_005357.1 + 453 0.67 0.117445
Target:  5'- uGCUGCGCGGccaGCuuGCGGGCGCUgUCGCg -3'
miRNA:   3'- -UGGCGCGCCc--CG--UGCCCGUGG-GGCGa -5'
26570 5' -68 NC_005357.1 + 11840 0.72 0.053741
Target:  5'- gGCCGCGCcgcGGuuGGCcUGGGCgaACCCCGCg -3'
miRNA:   3'- -UGGCGCG---CC--CCGuGCCCG--UGGGGCGa -5'
26570 5' -68 NC_005357.1 + 26242 0.71 0.066848
Target:  5'- -gCGCGCGucgccgaaGGCACGGGCA-CCCGCc -3'
miRNA:   3'- ugGCGCGCc-------CCGUGCCCGUgGGGCGa -5'
26570 5' -68 NC_005357.1 + 20703 0.69 0.089981
Target:  5'- gGCUGgaCGaCGaGGCACGGGCACCCCa-- -3'
miRNA:   3'- -UGGC--GC-GCcCCGUGCCCGUGGGGcga -5'
26570 5' -68 NC_005357.1 + 36812 0.69 0.092426
Target:  5'- cGCCGCGCcacGCGCGaaacGCACCCCGCc -3'
miRNA:   3'- -UGGCGCGcccCGUGCc---CGUGGGGCGa -5'
26570 5' -68 NC_005357.1 + 8997 0.69 0.094935
Target:  5'- cGCCGCGCgGGGGCgcuuccagcagGCGGcGCACCaguuCGUc -3'
miRNA:   3'- -UGGCGCG-CCCCG-----------UGCC-CGUGGg---GCGa -5'
26570 5' -68 NC_005357.1 + 27833 0.68 0.102853
Target:  5'- uGCC-CGCGGuGGCGCcGGcCGCgCCGCUg -3'
miRNA:   3'- -UGGcGCGCC-CCGUGcCC-GUGgGGCGA- -5'
26570 5' -68 NC_005357.1 + 9211 0.68 0.108185
Target:  5'- gGCgGCGCGGcGCacguucuGCGGcGCGCCCgGCg -3'
miRNA:   3'- -UGgCGCGCCcCG-------UGCC-CGUGGGgCGa -5'
26570 5' -68 NC_005357.1 + 12401 0.66 0.164832
Target:  5'- gUgGUGUGGGGCACcaaGGGCGCggCCGUg -3'
miRNA:   3'- uGgCGCGCCCCGUG---CCCGUGg-GGCGa -5'
26570 5' -68 NC_005357.1 + 38706 0.7 0.072518
Target:  5'- cACCgGCGUGaacGGCACGGGCGCCacgagCGCg -3'
miRNA:   3'- -UGG-CGCGCc--CCGUGCCCGUGGg----GCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.