Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26570 | 5' | -68 | NC_005357.1 | + | 453 | 0.67 | 0.117445 |
Target: 5'- uGCUGCGCGGccaGCuuGCGGGCGCUgUCGCg -3' miRNA: 3'- -UGGCGCGCCc--CG--UGCCCGUGG-GGCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 3740 | 0.67 | 0.133948 |
Target: 5'- cGCCG-GUGguGGGCACGucGGUGCCgCCGCUg -3' miRNA: 3'- -UGGCgCGC--CCCGUGC--CCGUGG-GGCGA- -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 4036 | 0.66 | 0.164832 |
Target: 5'- uGCCGCGCGGGucgagcGCAgcCGGGCGgaacuugauguCCCacagGCUg -3' miRNA: 3'- -UGGCGCGCCC------CGU--GCCCGU-----------GGGg---CGA- -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 5624 | 0.71 | 0.063307 |
Target: 5'- uUCGCGCGuGGCGCGGcGCAgCuuGCUg -3' miRNA: 3'- uGGCGCGCcCCGUGCC-CGUgGggCGA- -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 6161 | 0.67 | 0.117445 |
Target: 5'- --gGgGUGaGGCACGGGCACCCUuaGCg -3' miRNA: 3'- uggCgCGCcCCGUGCCCGUGGGG--CGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 8120 | 0.67 | 0.135357 |
Target: 5'- cACCGCGCGgccggcguugguuguGGGCguGCGGGUGucggcgcugcguCCCUGCg -3' miRNA: 3'- -UGGCGCGC---------------CCCG--UGCCCGU------------GGGGCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 8293 | 0.66 | 0.14113 |
Target: 5'- cGCUGC-CGGGGCagugcagccaGCGGuGCGCgCUGCUc -3' miRNA: 3'- -UGGCGcGCCCCG----------UGCC-CGUGgGGCGA- -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 8997 | 0.69 | 0.094935 |
Target: 5'- cGCCGCGCgGGGGCgcuuccagcagGCGGcGCACCaguuCGUc -3' miRNA: 3'- -UGGCGCG-CCCCG-----------UGCC-CGUGGg---GCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 9211 | 0.68 | 0.108185 |
Target: 5'- gGCgGCGCGGcGCacguucuGCGGcGCGCCCgGCg -3' miRNA: 3'- -UGgCGCGCCcCG-------UGCC-CGUGGGgCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 11840 | 0.72 | 0.053741 |
Target: 5'- gGCCGCGCcgcGGuuGGCcUGGGCgaACCCCGCg -3' miRNA: 3'- -UGGCGCG---CC--CCGuGCCCG--UGGGGCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 12401 | 0.66 | 0.164832 |
Target: 5'- gUgGUGUGGGGCACcaaGGGCGCggCCGUg -3' miRNA: 3'- uGgCGCGCCCCGUG---CCCGUGg-GGCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 12845 | 0.69 | 0.087597 |
Target: 5'- aACCGCGCGccuGGGCGCGGccgaccugacGCgauACCCCGa- -3' miRNA: 3'- -UGGCGCGC---CCCGUGCC----------CG---UGGGGCga -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 13049 | 0.69 | 0.094935 |
Target: 5'- uACCGCGCcgaguccgaGGGCugGGGCAaggccaCCgGCg -3' miRNA: 3'- -UGGCGCGc--------CCCGugCCCGUg-----GGgCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 14593 | 0.67 | 0.123806 |
Target: 5'- aGCgGCGCGGccGGCgccaccGCGGGCAgCgCGCg -3' miRNA: 3'- -UGgCGCGCC--CCG------UGCCCGUgGgGCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 15004 | 0.68 | 0.11438 |
Target: 5'- gGCCGC-C-GGGCGCGGuGCGCCaggCGCg -3' miRNA: 3'- -UGGCGcGcCCCGUGCC-CGUGGg--GCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 15688 | 0.68 | 0.11438 |
Target: 5'- aAUCGCaGCGGGcGCGCuGGCggugGCCCgGCUu -3' miRNA: 3'- -UGGCG-CGCCC-CGUGcCCG----UGGGgCGA- -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 17998 | 0.69 | 0.094935 |
Target: 5'- gGCCGCGCGcGGCAccgacaaauCGGGCcgGCUgCGCUu -3' miRNA: 3'- -UGGCGCGCcCCGU---------GCCCG--UGGgGCGA- -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 18062 | 0.66 | 0.160647 |
Target: 5'- uACCgGCGCGGGGUGCGuGCuggGCCgCCGa- -3' miRNA: 3'- -UGG-CGCGCCCCGUGCcCG---UGG-GGCga -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 18328 | 0.66 | 0.14113 |
Target: 5'- cGCgCGCauguaGCGGGGUGCccGUGCCCCGCg -3' miRNA: 3'- -UG-GCG-----CGCCCCGUGccCGUGGGGCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 19917 | 0.67 | 0.130485 |
Target: 5'- uGCuCGCuGCGGGGaugaugGCGGGCAUgaccagcccagCCCGCc -3' miRNA: 3'- -UG-GCG-CGCCCCg-----UGCCCGUG-----------GGGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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