Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26570 | 5' | -68 | NC_005357.1 | + | 39342 | 0.67 | 0.130485 |
Target: 5'- uGCCGCGUGucgaaGGGCAUGGGUgcgGCUCgggCGCUu -3' miRNA: 3'- -UGGCGCGC-----CCCGUGCCCG---UGGG---GCGA- -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 38706 | 0.7 | 0.072518 |
Target: 5'- cACCgGCGUGaacGGCACGGGCGCCacgagCGCg -3' miRNA: 3'- -UGG-CGCGCc--CCGUGCCCGUGGg----GCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 37291 | 0.66 | 0.160647 |
Target: 5'- gGCCGCcuGCGcGGCACGuugcaguucaacGGCGCCagCCGCa -3' miRNA: 3'- -UGGCG--CGCcCCGUGC------------CCGUGG--GGCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 36812 | 0.69 | 0.092426 |
Target: 5'- cGCCGCGCcacGCGCGaaacGCACCCCGCc -3' miRNA: 3'- -UGGCGCGcccCGUGCc---CGUGGGGCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 36091 | 0.67 | 0.130485 |
Target: 5'- gGCCGgGCGcuuuGGCugGGGCggaacGCgCCGCg -3' miRNA: 3'- -UGGCgCGCc---CCGugCCCG-----UGgGGCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 34321 | 0.66 | 0.152564 |
Target: 5'- gGCCGCGCGGuGCA-GGGCcUCaaaCGCUu -3' miRNA: 3'- -UGGCGCGCCcCGUgCCCGuGGg--GCGA- -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 32415 | 0.69 | 0.089259 |
Target: 5'- uACCaGgGCGGGGgC-CGGGCgcgcggcacuuucgACCCCGCc -3' miRNA: 3'- -UGG-CgCGCCCC-GuGCCCG--------------UGGGGCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 27833 | 0.68 | 0.102853 |
Target: 5'- uGCC-CGCGGuGGCGCcGGcCGCgCCGCUg -3' miRNA: 3'- -UGGcGCGCC-CCGUGcCC-GUGgGGCGA- -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 26242 | 0.71 | 0.066848 |
Target: 5'- -gCGCGCGucgccgaaGGCACGGGCA-CCCGCc -3' miRNA: 3'- ugGCGCGCc-------CCGUGCCCGUgGGGCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 26048 | 0.67 | 0.127105 |
Target: 5'- cCCGCGCGgcGGGCGCGcuccauGCGCUCgGCg -3' miRNA: 3'- uGGCGCGC--CCCGUGCc-----CGUGGGgCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 24722 | 0.66 | 0.152564 |
Target: 5'- uGCCGCGauGGGCAUuucccggcccgaGuGGCGCUUCGCc -3' miRNA: 3'- -UGGCGCgcCCCGUG------------C-CCGUGGGGCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 24087 | 1.06 | 0.000072 |
Target: 5'- gACCGCGCGGGGCACGGGCACCCCGCUa -3' miRNA: 3'- -UGGCGCGCCCCGUGCCCGUGGGGCGA- -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 23567 | 0.66 | 0.14113 |
Target: 5'- cCCGaaCGuGGGCAUGGGcCGCCCgGCc -3' miRNA: 3'- uGGCgcGC-CCCGUGCCC-GUGGGgCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 20703 | 0.69 | 0.089981 |
Target: 5'- gGCUGgaCGaCGaGGCACGGGCACCCCa-- -3' miRNA: 3'- -UGGC--GC-GCcCCGUGCCCGUGGGGcga -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 19917 | 0.67 | 0.130485 |
Target: 5'- uGCuCGCuGCGGGGaugaugGCGGGCAUgaccagcccagCCCGCc -3' miRNA: 3'- -UG-GCG-CGCCCCg-----UGCCCGUG-----------GGGCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 18328 | 0.66 | 0.14113 |
Target: 5'- cGCgCGCauguaGCGGGGUGCccGUGCCCCGCg -3' miRNA: 3'- -UG-GCG-----CGCCCCGUGccCGUGGGGCGa -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 18062 | 0.66 | 0.160647 |
Target: 5'- uACCgGCGCGGGGUGCGuGCuggGCCgCCGa- -3' miRNA: 3'- -UGG-CGCGCCCCGUGCcCG---UGG-GGCga -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 17998 | 0.69 | 0.094935 |
Target: 5'- gGCCGCGCGcGGCAccgacaaauCGGGCcgGCUgCGCUu -3' miRNA: 3'- -UGGCGCGCcCCGU---------GCCCG--UGGgGCGA- -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 15688 | 0.68 | 0.11438 |
Target: 5'- aAUCGCaGCGGGcGCGCuGGCggugGCCCgGCUu -3' miRNA: 3'- -UGGCG-CGCCC-CGUGcCCG----UGGGgCGA- -5' |
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26570 | 5' | -68 | NC_005357.1 | + | 15004 | 0.68 | 0.11438 |
Target: 5'- gGCCGC-C-GGGCGCGGuGCGCCaggCGCg -3' miRNA: 3'- -UGGCGcGcCCCGUGCC-CGUGGg--GCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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