miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2658 5' -54.8 NC_001491.2 + 68540 0.66 0.915514
Target:  5'- aGACgUGCUgGgGGCGacGCuGGCACCg -3'
miRNA:   3'- aUUGaGCGAgUgCCGCa-UGuCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 69413 0.68 0.836724
Target:  5'- cGGCUCug-UACGGCGUGCu-GCGCCa -3'
miRNA:   3'- aUUGAGcgaGUGCCGCAUGucCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 89953 1.11 0.002542
Target:  5'- uUAACUCGCUCACGGCGUACAGGCACCg -3'
miRNA:   3'- -AUUGAGCGAGUGCCGCAUGUCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 95146 0.68 0.844968
Target:  5'- cGACcagCGa-CGCGGUGUACacguGGGCACCu -3'
miRNA:   3'- aUUGa--GCgaGUGCCGCAUG----UCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 103482 0.66 0.926795
Target:  5'- aAACUCGCggacguuguUUugGGCGUuuccgucuaAgGGGCACa -3'
miRNA:   3'- aUUGAGCG---------AGugCCGCA---------UgUCCGUGg -5'
2658 5' -54.8 NC_001491.2 + 107433 0.66 0.941878
Target:  5'- -uACUCGUgc-UGGCGUGuCAGGUccaGCCg -3'
miRNA:   3'- auUGAGCGaguGCCGCAU-GUCCG---UGG- -5'
2658 5' -54.8 NC_001491.2 + 109281 0.66 0.941878
Target:  5'- cAGCUUGCUCAacacguccaucuCGGCGUugAauuccGuGUACCa -3'
miRNA:   3'- aUUGAGCGAGU------------GCCGCAugU-----C-CGUGG- -5'
2658 5' -54.8 NC_001491.2 + 112612 0.67 0.909506
Target:  5'- cUGACUUGU--GCGGCa-GCGGGUGCCa -3'
miRNA:   3'- -AUUGAGCGagUGCCGcaUGUCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 112850 0.66 0.921277
Target:  5'- gGGCUCGCUCuCGGUGggACc-GCACg -3'
miRNA:   3'- aUUGAGCGAGuGCCGCa-UGucCGUGg -5'
2658 5' -54.8 NC_001491.2 + 115241 0.75 0.500923
Target:  5'- gGACUCcCUCGCGGCGcUAUGGGUuCCg -3'
miRNA:   3'- aUUGAGcGAGUGCCGC-AUGUCCGuGG- -5'
2658 5' -54.8 NC_001491.2 + 115577 0.68 0.853015
Target:  5'- cGGCcCGCUguUGGCGgugcuucGCAGGCGCg -3'
miRNA:   3'- aUUGaGCGAguGCCGCa------UGUCCGUGg -5'
2658 5' -54.8 NC_001491.2 + 131910 0.69 0.819669
Target:  5'- aUAACaUCGCUgGgGGuUGgcaGCAGGCACCc -3'
miRNA:   3'- -AUUG-AGCGAgUgCC-GCa--UGUCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 132808 0.68 0.875896
Target:  5'- aAACUCgGCgUCGuguaGGCGUAUgcuaccaagGGGCGCCa -3'
miRNA:   3'- aUUGAG-CG-AGUg---CCGCAUG---------UCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 136888 0.69 0.828288
Target:  5'- cGGCaUCGCUCGC-GUGUGC-GGCAgCCa -3'
miRNA:   3'- aUUG-AGCGAGUGcCGCAUGuCCGU-GG- -5'
2658 5' -54.8 NC_001491.2 + 138131 0.66 0.926254
Target:  5'- ----gUGCUCACugacguaGGUGUACGGGUugCc -3'
miRNA:   3'- auugaGCGAGUG-------CCGCAUGUCCGugG- -5'
2658 5' -54.8 NC_001491.2 + 138292 0.68 0.860081
Target:  5'- cGACUCGggauaUCGCGGCGUcgugaaaGCGGuacaauucGCACCu -3'
miRNA:   3'- aUUGAGCg----AGUGCCGCA-------UGUC--------CGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.