miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26584 5' -53.1 NC_005357.1 + 270 0.7 0.459458
Target:  5'- cGCUugAGGCAcggcguCCAGUAGCUGCgccggaagGCGc -3'
miRNA:   3'- cCGGugUUCGU------GGUCAUUGACGa-------CGU- -5'
26584 5' -53.1 NC_005357.1 + 1059 0.66 0.707351
Target:  5'- cGCCGCGaaccGGCGuCCAGUAACgcgcGCgGUAg -3'
miRNA:   3'- cCGGUGU----UCGU-GGUCAUUGa---CGaCGU- -5'
26584 5' -53.1 NC_005357.1 + 4205 0.67 0.626929
Target:  5'- uGGCCGCGAGCAC--GUcGCgGCUuGCGg -3'
miRNA:   3'- -CCGGUGUUCGUGguCAuUGaCGA-CGU- -5'
26584 5' -53.1 NC_005357.1 + 4950 0.67 0.673117
Target:  5'- cGCCACGAuGCAgCCGcGUAucgcGCUGCUGg- -3'
miRNA:   3'- cCGGUGUU-CGU-GGU-CAU----UGACGACgu -5'
26584 5' -53.1 NC_005357.1 + 5323 0.75 0.237829
Target:  5'- aGGCCGCGAGCACguGgcGCaGCaugGCAu -3'
miRNA:   3'- -CCGGUGUUCGUGguCauUGaCGa--CGU- -5'
26584 5' -53.1 NC_005357.1 + 5362 0.67 0.637341
Target:  5'- uGGCCGCcuGCACCGcgcccaggguuauGUcACUGgUGCg -3'
miRNA:   3'- -CCGGUGuuCGUGGU-------------CAuUGACgACGu -5'
26584 5' -53.1 NC_005357.1 + 5402 0.68 0.592297
Target:  5'- cGCCGCGAGCACCuu---CUGCguacGCu -3'
miRNA:   3'- cCGGUGUUCGUGGucauuGACGa---CGu -5'
26584 5' -53.1 NC_005357.1 + 7256 0.67 0.684588
Target:  5'- cGGCCGCccAGguCUug-AACUGCUGCu -3'
miRNA:   3'- -CCGGUGu-UCguGGucaUUGACGACGu -5'
26584 5' -53.1 NC_005357.1 + 8652 0.68 0.580814
Target:  5'- aGGCCGCGccGUACucgcugugugCAGcGGCUGCUGCGc -3'
miRNA:   3'- -CCGGUGUu-CGUG----------GUCaUUGACGACGU- -5'
26584 5' -53.1 NC_005357.1 + 9570 0.66 0.707351
Target:  5'- cGGUgGCGAGCAuCCGGUcgAACacGUUGCGc -3'
miRNA:   3'- -CCGgUGUUCGU-GGUCA--UUGa-CGACGU- -5'
26584 5' -53.1 NC_005357.1 + 10140 0.67 0.684588
Target:  5'- aGGUCGCGcaacGCGCUGGUguuuuccugGAUUGCUGCu -3'
miRNA:   3'- -CCGGUGUu---CGUGGUCA---------UUGACGACGu -5'
26584 5' -53.1 NC_005357.1 + 10726 0.67 0.638497
Target:  5'- cGCgGCGGGCuggUCAGgcGgUGCUGCAg -3'
miRNA:   3'- cCGgUGUUCGu--GGUCauUgACGACGU- -5'
26584 5' -53.1 NC_005357.1 + 10787 0.66 0.740852
Target:  5'- cGGCCugGGaUugCAuGU-ACUGCUGCGc -3'
miRNA:   3'- -CCGGugUUcGugGU-CAuUGACGACGU- -5'
26584 5' -53.1 NC_005357.1 + 11092 0.69 0.546683
Target:  5'- cGCgCGCGAGCACCuuGUcGGCUGCgGCc -3'
miRNA:   3'- cCG-GUGUUCGUGGu-CA-UUGACGaCGu -5'
26584 5' -53.1 NC_005357.1 + 12812 0.76 0.225106
Target:  5'- cGGCCACAAGCGCCcGgcGCUGgacaacugGCAa -3'
miRNA:   3'- -CCGGUGUUCGUGGuCauUGACga------CGU- -5'
26584 5' -53.1 NC_005357.1 + 13618 0.69 0.535443
Target:  5'- uGCCGacAGCAUCGGUAGCgGCaGCAa -3'
miRNA:   3'- cCGGUguUCGUGGUCAUUGaCGaCGU- -5'
26584 5' -53.1 NC_005357.1 + 13773 0.72 0.370946
Target:  5'- aGGCCGCcGGCACCGaucuGgcACUGCgcGCGg -3'
miRNA:   3'- -CCGGUGuUCGUGGU----CauUGACGa-CGU- -5'
26584 5' -53.1 NC_005357.1 + 15563 0.69 0.524285
Target:  5'- aGGUCAauGGCGCCgucAGUGACgacgcGCUGCGg -3'
miRNA:   3'- -CCGGUguUCGUGG---UCAUUGa----CGACGU- -5'
26584 5' -53.1 NC_005357.1 + 17114 0.77 0.169904
Target:  5'- cGGCgACGAGCGCCGGUGGCagggccgGCcGCAc -3'
miRNA:   3'- -CCGgUGUUCGUGGUCAUUGa------CGaCGU- -5'
26584 5' -53.1 NC_005357.1 + 17340 0.69 0.535443
Target:  5'- -cCCAC-GGCGCCGGgcGC-GCUGCGc -3'
miRNA:   3'- ccGGUGuUCGUGGUCauUGaCGACGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.