miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26584 5' -53.1 NC_005357.1 + 39612 0.66 0.708482
Target:  5'- uGGCCGCGAGCACCuGgcccGACgaaucgacgaaguggGC-GCAc -3'
miRNA:   3'- -CCGGUGUUCGUGGuCa---UUGa--------------CGaCGU- -5'
26584 5' -53.1 NC_005357.1 + 32914 0.67 0.684588
Target:  5'- cGGCCACGGcCugCAc-GGCUGCUGUu -3'
miRNA:   3'- -CCGGUGUUcGugGUcaUUGACGACGu -5'
26584 5' -53.1 NC_005357.1 + 7256 0.67 0.684588
Target:  5'- cGGCCGCccAGguCUug-AACUGCUGCu -3'
miRNA:   3'- -CCGGUGu-UCguGGucaUUGACGACGu -5'
26584 5' -53.1 NC_005357.1 + 18383 0.66 0.696004
Target:  5'- uGGCCuuGCcgauGGCGCCGGUGGCgGCcacgucgGCGa -3'
miRNA:   3'- -CCGG--UGu---UCGUGGUCAUUGaCGa------CGU- -5'
26584 5' -53.1 NC_005357.1 + 27700 0.66 0.696004
Target:  5'- aGGCCGC--GCGCCGGcAGCgGCUcGCc -3'
miRNA:   3'- -CCGGUGuuCGUGGUCaUUGaCGA-CGu -5'
26584 5' -53.1 NC_005357.1 + 19466 0.66 0.700552
Target:  5'- cGCCAuaguucagcuugcgcCAGGUGCCGGUGggcagGCcGCUGCGa -3'
miRNA:   3'- cCGGU---------------GUUCGUGGUCAU-----UGaCGACGU- -5'
26584 5' -53.1 NC_005357.1 + 9570 0.66 0.707351
Target:  5'- cGGUgGCGAGCAuCCGGUcgAACacGUUGCGc -3'
miRNA:   3'- -CCGgUGUUCGU-GGUCA--UUGa-CGACGU- -5'
26584 5' -53.1 NC_005357.1 + 25369 0.66 0.707351
Target:  5'- cGGCCaccggGCAGGCGCCAGaAGCccuuUUGCGa -3'
miRNA:   3'- -CCGG-----UGUUCGUGGUCaUUGac--GACGU- -5'
26584 5' -53.1 NC_005357.1 + 1059 0.66 0.707351
Target:  5'- cGCCGCGaaccGGCGuCCAGUAACgcgcGCgGUAg -3'
miRNA:   3'- cCGGUGU----UCGU-GGUCAUUGa---CGaCGU- -5'
26584 5' -53.1 NC_005357.1 + 41430 0.67 0.638497
Target:  5'- cGGCCAguGGCGCgGGcAGCggGCUGaCGg -3'
miRNA:   3'- -CCGGUguUCGUGgUCaUUGa-CGAC-GU- -5'
26584 5' -53.1 NC_005357.1 + 37085 0.67 0.626929
Target:  5'- cGGCCACGcAGCGCgAugccaUGCUGCGc -3'
miRNA:   3'- -CCGGUGU-UCGUGgUcauugACGACGU- -5'
26584 5' -53.1 NC_005357.1 + 25830 0.68 0.592297
Target:  5'- gGGCCGCcguuGGCGCCGGUcaguuccaUGCUGg- -3'
miRNA:   3'- -CCGGUGu---UCGUGGUCAuug-----ACGACgu -5'
26584 5' -53.1 NC_005357.1 + 22903 0.73 0.318753
Target:  5'- uGCUGCGAGUcgAgCAGUuGCUGCUGCAu -3'
miRNA:   3'- cCGGUGUUCG--UgGUCAuUGACGACGU- -5'
26584 5' -53.1 NC_005357.1 + 20278 0.73 0.327056
Target:  5'- uGGCCGuCGuugcccGCACCAGUAGCggGUUGCu -3'
miRNA:   3'- -CCGGU-GUu-----CGUGGUCAUUGa-CGACGu -5'
26584 5' -53.1 NC_005357.1 + 35179 0.71 0.418688
Target:  5'- aGGCCgGCGAcaucggcccGCGCCAGUGGCcgaaGUUGCAg -3'
miRNA:   3'- -CCGG-UGUU---------CGUGGUCAUUGa---CGACGU- -5'
26584 5' -53.1 NC_005357.1 + 27444 0.7 0.48062
Target:  5'- cGGCCGCAGGC-CCuGgcGCUGguaUGCc -3'
miRNA:   3'- -CCGGUGUUCGuGGuCauUGACg--ACGu -5'
26584 5' -53.1 NC_005357.1 + 15563 0.69 0.524285
Target:  5'- aGGUCAauGGCGCCgucAGUGACgacgcGCUGCGg -3'
miRNA:   3'- -CCGGUguUCGUGG---UCAUUGa----CGACGU- -5'
26584 5' -53.1 NC_005357.1 + 13618 0.69 0.535443
Target:  5'- uGCCGacAGCAUCGGUAGCgGCaGCAa -3'
miRNA:   3'- cCGGUguUCGUGGUCAUUGaCGaCGU- -5'
26584 5' -53.1 NC_005357.1 + 11092 0.69 0.546683
Target:  5'- cGCgCGCGAGCACCuuGUcGGCUGCgGCc -3'
miRNA:   3'- cCG-GUGUUCGUGGu-CA-UUGACGaCGu -5'
26584 5' -53.1 NC_005357.1 + 28405 0.68 0.569378
Target:  5'- cGGCgGCGcGGCGCCAGUAGaUGcCUGUc -3'
miRNA:   3'- -CCGgUGU-UCGUGGUCAUUgAC-GACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.