miRNA: 3'- cuUGGGcCGCGCgAGC-GUGuUGAUAC- -5'
miRNA: 3'- cuUGGGCCGCGcgagCGugUUGAUAC- -5'
miRNA: 3'- cUUGGGCCgCGCg--AGCGUGUUGAUac -5'
miRNA: 3'- cuUGGgCCGCGCGA-GCGugU---UGaUAC- -5'
miRNA: 3'- -CUUGGGCCGCGCGAG-CGUGUUGauac -5'
Results 41 - 45 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 26586 | 3' | -55.4 | NC_005357.1 | + | 18352 | 0.68 | 0.493096 |
|
Target: 5'- -uGCCCcGCGCGgUCGcCGCuACUGUGc -3' miRNA: 3'- cuUGGGcCGCGCgAGC-GUGuUGAUAC- -5' |
|||||||
| 26586 | 3' | -55.4 | NC_005357.1 | + | 22961 | 0.68 | 0.493096 |
|
Target: 5'- -cACCUGGCGCaa--GCugAACUAUGg -3' miRNA: 3'- cuUGGGCCGCGcgagCGugUUGAUAC- -5' |
|||||||
| 26586 | 3' | -55.4 | NC_005357.1 | + | 37837 | 0.67 | 0.525238 |
|
Target: 5'- uGACCUGG-GCGgcaUCGCAUAACUAg- -3' miRNA: 3'- cUUGGGCCgCGCg--AGCGUGUUGAUac -5' |
|||||||
| 26586 | 3' | -55.4 | NC_005357.1 | + | 17347 | 0.67 | 0.525238 |
|
Target: 5'- -cGCCgGGCGCGCUgCGCugGgugGCgAUGc -3' miRNA: 3'- cuUGGgCCGCGCGA-GCGugU---UGaUAC- -5' |
|||||||
| 26586 | 3' | -55.4 | NC_005357.1 | + | 20100 | 0.79 | 0.105209 |
|
Target: 5'- aGAACUCGGCGCGUUCgGCACGGCc--- -3' miRNA: 3'- -CUUGGGCCGCGCGAG-CGUGUUGauac -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home