miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26586 3' -55.4 NC_005357.1 + 5746 0.67 0.547102
Target:  5'- -cGCCCaGCGCGC-CGgGCAGCg--- -3'
miRNA:   3'- cuUGGGcCGCGCGaGCgUGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 37758 0.67 0.558142
Target:  5'- -uAUCCGGCGCGCUggugccCGC-CAACa--- -3'
miRNA:   3'- cuUGGGCCGCGCGA------GCGuGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 15187 0.66 0.580401
Target:  5'- aGAGCCUGGgGCGC-CGgCugGACa--- -3'
miRNA:   3'- -CUUGGGCCgCGCGaGC-GugUUGauac -5'
26586 3' -55.4 NC_005357.1 + 12807 0.66 0.580401
Target:  5'- aAGCCCGGCcacaaGCGCccggCGCugGACa--- -3'
miRNA:   3'- cUUGGGCCG-----CGCGa---GCGugUUGauac -5'
26586 3' -55.4 NC_005357.1 + 1080 0.66 0.591603
Target:  5'- cGACCCGGCGCGCguacuucaUGUugGCGGCg--- -3'
miRNA:   3'- cUUGGGCCGCGCGa-------GCG--UGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 5632 0.66 0.614105
Target:  5'- uGGCgCGGCGCaGCUUGCugGugGCUGg- -3'
miRNA:   3'- cUUGgGCCGCG-CGAGCGugU--UGAUac -5'
26586 3' -55.4 NC_005357.1 + 18291 0.66 0.614105
Target:  5'- uGGGCCaGGCGCGCagccgGCugGACUAc- -3'
miRNA:   3'- -CUUGGgCCGCGCGag---CGugUUGAUac -5'
26586 3' -55.4 NC_005357.1 + 38270 0.66 0.614105
Target:  5'- cGACCaCGGCGCGCaaggUGgGCGGCUu-- -3'
miRNA:   3'- cUUGG-GCCGCGCGa---GCgUGUUGAuac -5'
26586 3' -55.4 NC_005357.1 + 12355 0.67 0.536131
Target:  5'- -cGCCCGG-GCGC-CGCACAAa---- -3'
miRNA:   3'- cuUGGGCCgCGCGaGCGUGUUgauac -5'
26586 3' -55.4 NC_005357.1 + 17347 0.67 0.525238
Target:  5'- -cGCCgGGCGCGCUgCGCugGgugGCgAUGc -3'
miRNA:   3'- cuUGGgCCGCGCGA-GCGugU---UGaUAC- -5'
26586 3' -55.4 NC_005357.1 + 37837 0.67 0.525238
Target:  5'- uGACCUGG-GCGgcaUCGCAUAACUAg- -3'
miRNA:   3'- cUUGGGCCgCGCg--AGCGUGUUGAUac -5'
26586 3' -55.4 NC_005357.1 + 18914 0.75 0.17079
Target:  5'- -cGCCUggaaGGCGCGCUCGCGgAACUGc- -3'
miRNA:   3'- cuUGGG----CCGCGCGAGCGUgUUGAUac -5'
26586 3' -55.4 NC_005357.1 + 38389 0.74 0.218737
Target:  5'- -cGCCCGGCuGCGCUCgacccGCGCGGC-AUGa -3'
miRNA:   3'- cuUGGGCCG-CGCGAG-----CGUGUUGaUAC- -5'
26586 3' -55.4 NC_005357.1 + 2743 0.72 0.292442
Target:  5'- cGGCCCGGCGCuGCUCGgGCGugccgaccACUGc- -3'
miRNA:   3'- cUUGGGCCGCG-CGAGCgUGU--------UGAUac -5'
26586 3' -55.4 NC_005357.1 + 15010 0.72 0.307765
Target:  5'- cGGGCgCGGUGCGCcaggCGCGCGACg--- -3'
miRNA:   3'- -CUUGgGCCGCGCGa---GCGUGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 33207 0.7 0.384186
Target:  5'- -cGCCgGGCGCGC-CGCAgAACg--- -3'
miRNA:   3'- cuUGGgCCGCGCGaGCGUgUUGauac -5'
26586 3' -55.4 NC_005357.1 + 31481 0.7 0.393418
Target:  5'- --cCCCGGCuGuCGC-CGCGCAACUGc- -3'
miRNA:   3'- cuuGGGCCG-C-GCGaGCGUGUUGAUac -5'
26586 3' -55.4 NC_005357.1 + 29139 0.68 0.472177
Target:  5'- --cCCCGGCGCGCU-GCAauCGGCgcUGa -3'
miRNA:   3'- cuuGGGCCGCGCGAgCGU--GUUGauAC- -5'
26586 3' -55.4 NC_005357.1 + 18352 0.68 0.493096
Target:  5'- -uGCCCcGCGCGgUCGcCGCuACUGUGc -3'
miRNA:   3'- cuUGGGcCGCGCgAGC-GUGuUGAUAC- -5'
26586 3' -55.4 NC_005357.1 + 22961 0.68 0.493096
Target:  5'- -cACCUGGCGCaa--GCugAACUAUGg -3'
miRNA:   3'- cuUGGGCCGCGcgagCGugUUGAUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.