miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26586 3' -55.4 NC_005357.1 + 32041 1.07 0.000872
Target:  5'- uGAACCCGGCGCGCUCGCACAACUAUGc -3'
miRNA:   3'- -CUUGGGCCGCGCGAGCGUGUUGAUAC- -5'
26586 3' -55.4 NC_005357.1 + 9315 0.66 0.636672
Target:  5'- cGACCUGGCgGCGCacgUCGgCGCGGCg--- -3'
miRNA:   3'- cUUGGGCCG-CGCG---AGC-GUGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 12392 0.66 0.614105
Target:  5'- cGAugCCuGCGCGCUUGUauGCGGCcuugAUGc -3'
miRNA:   3'- -CUugGGcCGCGCGAGCG--UGUUGa---UAC- -5'
26586 3' -55.4 NC_005357.1 + 29427 0.66 0.602841
Target:  5'- -uGCCCa-CGCGCUCGCACGucGCg--- -3'
miRNA:   3'- cuUGGGccGCGCGAGCGUGU--UGauac -5'
26586 3' -55.4 NC_005357.1 + 8380 0.66 0.591603
Target:  5'- cGAACCCGGC---CUCGCGCuGGCUGc- -3'
miRNA:   3'- -CUUGGGCCGcgcGAGCGUG-UUGAUac -5'
26586 3' -55.4 NC_005357.1 + 18134 0.67 0.569245
Target:  5'- cGAACuuGuCGCccgGCUCGCGCAGCUu-- -3'
miRNA:   3'- -CUUGggCcGCG---CGAGCGUGUUGAuac -5'
26586 3' -55.4 NC_005357.1 + 26272 0.67 0.558142
Target:  5'- cGGCCUGGuCG-GCUCGCGCAucgcGCgcgAUGg -3'
miRNA:   3'- cUUGGGCC-GCgCGAGCGUGU----UGa--UAC- -5'
26586 3' -55.4 NC_005357.1 + 28757 0.67 0.536131
Target:  5'- cAGCgCGGUGCGCUucucggcgCGCACGGCg--- -3'
miRNA:   3'- cUUGgGCCGCGCGA--------GCGUGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 7092 0.68 0.514431
Target:  5'- -uACCCacGGCGCGCccacgCGCACGAUg--- -3'
miRNA:   3'- cuUGGG--CCGCGCGa----GCGUGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 1129 0.68 0.482582
Target:  5'- cGGCCCGGUGUaaccguuaGCUCGCGCuACg--- -3'
miRNA:   3'- cUUGGGCCGCG--------CGAGCGUGuUGauac -5'
26586 3' -55.4 NC_005357.1 + 38041 0.68 0.461887
Target:  5'- aGGCCCGGCGCGacggCGCcUGGCUGc- -3'
miRNA:   3'- cUUGGGCCGCGCga--GCGuGUUGAUac -5'
26586 3' -55.4 NC_005357.1 + 36690 0.75 0.17079
Target:  5'- -uGCCCGGCGCGCU-GgGCGAuCUGUGc -3'
miRNA:   3'- cuUGGGCCGCGCGAgCgUGUU-GAUAC- -5'
26586 3' -55.4 NC_005357.1 + 28312 0.74 0.201593
Target:  5'- aGAACUCGGCGCGCUCgGCGuCGgACUcgAUGg -3'
miRNA:   3'- -CUUGGGCCGCGCGAG-CGU-GU-UGA--UAC- -5'
26586 3' -55.4 NC_005357.1 + 3180 0.74 0.224722
Target:  5'- aAGCCCGGCGUccGCUgCGUACAGCUu-- -3'
miRNA:   3'- cUUGGGCCGCG--CGA-GCGUGUUGAuac -5'
26586 3' -55.4 NC_005357.1 + 38854 0.74 0.230846
Target:  5'- uGACCCGGCGCG-UCGCugAAauUUAUGc -3'
miRNA:   3'- cUUGGGCCGCGCgAGCGugUU--GAUAC- -5'
26586 3' -55.4 NC_005357.1 + 31230 0.73 0.243517
Target:  5'- aGAAcCCCGGCGCGCg-GCcCAGCUAc- -3'
miRNA:   3'- -CUU-GGGCCGCGCGagCGuGUUGAUac -5'
26586 3' -55.4 NC_005357.1 + 17289 0.69 0.451716
Target:  5'- cGAAgCCGGCGcCGCgggCGCGCAuccauuccgGCaUAUGg -3'
miRNA:   3'- -CUUgGGCCGC-GCGa--GCGUGU---------UG-AUAC- -5'
26586 3' -55.4 NC_005357.1 + 27887 0.68 0.461887
Target:  5'- --uCuuGGCGUGCUCGCcCAGCa--- -3'
miRNA:   3'- cuuGggCCGCGCGAGCGuGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 7361 0.66 0.636672
Target:  5'- cGACCuCGGCGuCGUUCGUcCAGCg--- -3'
miRNA:   3'- cUUGG-GCCGC-GCGAGCGuGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 18914 0.75 0.17079
Target:  5'- -cGCCUggaaGGCGCGCUCGCGgAACUGc- -3'
miRNA:   3'- cuUGGG----CCGCGCGAGCGUgUUGAUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.