miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26586 3' -55.4 NC_005357.1 + 1080 0.66 0.591603
Target:  5'- cGACCCGGCGCGCguacuucaUGUugGCGGCg--- -3'
miRNA:   3'- cUUGGGCCGCGCGa-------GCG--UGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 1129 0.68 0.482582
Target:  5'- cGGCCCGGUGUaaccguuaGCUCGCGCuACg--- -3'
miRNA:   3'- cUUGGGCCGCG--------CGAGCGUGuUGauac -5'
26586 3' -55.4 NC_005357.1 + 2743 0.72 0.292442
Target:  5'- cGGCCCGGCGCuGCUCGgGCGugccgaccACUGc- -3'
miRNA:   3'- cUUGGGCCGCG-CGAGCgUGU--------UGAUac -5'
26586 3' -55.4 NC_005357.1 + 3180 0.74 0.224722
Target:  5'- aAGCCCGGCGUccGCUgCGUACAGCUu-- -3'
miRNA:   3'- cUUGGGCCGCG--CGA-GCGUGUUGAuac -5'
26586 3' -55.4 NC_005357.1 + 5632 0.66 0.614105
Target:  5'- uGGCgCGGCGCaGCUUGCugGugGCUGg- -3'
miRNA:   3'- cUUGgGCCGCG-CGAGCGugU--UGAUac -5'
26586 3' -55.4 NC_005357.1 + 5746 0.67 0.547102
Target:  5'- -cGCCCaGCGCGC-CGgGCAGCg--- -3'
miRNA:   3'- cuUGGGcCGCGCGaGCgUGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 7092 0.68 0.514431
Target:  5'- -uACCCacGGCGCGCccacgCGCACGAUg--- -3'
miRNA:   3'- cuUGGG--CCGCGCGa----GCGUGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 7361 0.66 0.636672
Target:  5'- cGACCuCGGCGuCGUUCGUcCAGCg--- -3'
miRNA:   3'- cUUGG-GCCGC-GCGAGCGuGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 8380 0.66 0.591603
Target:  5'- cGAACCCGGC---CUCGCGCuGGCUGc- -3'
miRNA:   3'- -CUUGGGCCGcgcGAGCGUG-UUGAUac -5'
26586 3' -55.4 NC_005357.1 + 8735 0.67 0.547102
Target:  5'- -uGCCCGGCGgGCgcggCGCuaccguCAAC-AUGg -3'
miRNA:   3'- cuUGGGCCGCgCGa---GCGu-----GUUGaUAC- -5'
26586 3' -55.4 NC_005357.1 + 9315 0.66 0.636672
Target:  5'- cGACCUGGCgGCGCacgUCGgCGCGGCg--- -3'
miRNA:   3'- cUUGGGCCG-CGCG---AGC-GUGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 12160 0.66 0.636672
Target:  5'- --uUCCGGCGa-CUCGCGCGACc--- -3'
miRNA:   3'- cuuGGGCCGCgcGAGCGUGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 12355 0.67 0.536131
Target:  5'- -cGCCCGG-GCGC-CGCACAAa---- -3'
miRNA:   3'- cuUGGGCCgCGCGaGCGUGUUgauac -5'
26586 3' -55.4 NC_005357.1 + 12392 0.66 0.614105
Target:  5'- cGAugCCuGCGCGCUUGUauGCGGCcuugAUGc -3'
miRNA:   3'- -CUugGGcCGCGCGAGCG--UGUUGa---UAC- -5'
26586 3' -55.4 NC_005357.1 + 12807 0.66 0.580401
Target:  5'- aAGCCCGGCcacaaGCGCccggCGCugGACa--- -3'
miRNA:   3'- cUUGGGCCG-----CGCGa---GCGugUUGauac -5'
26586 3' -55.4 NC_005357.1 + 15010 0.72 0.307765
Target:  5'- cGGGCgCGGUGCGCcaggCGCGCGACg--- -3'
miRNA:   3'- -CUUGgGCCGCGCGa---GCGUGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 15187 0.66 0.580401
Target:  5'- aGAGCCUGGgGCGC-CGgCugGACa--- -3'
miRNA:   3'- -CUUGGGCCgCGCGaGC-GugUUGauac -5'
26586 3' -55.4 NC_005357.1 + 17289 0.69 0.451716
Target:  5'- cGAAgCCGGCGcCGCgggCGCGCAuccauuccgGCaUAUGg -3'
miRNA:   3'- -CUUgGGCCGC-GCGa--GCGUGU---------UG-AUAC- -5'
26586 3' -55.4 NC_005357.1 + 17347 0.67 0.525238
Target:  5'- -cGCCgGGCGCGCUgCGCugGgugGCgAUGc -3'
miRNA:   3'- cuUGGgCCGCGCGA-GCGugU---UGaUAC- -5'
26586 3' -55.4 NC_005357.1 + 18134 0.67 0.569245
Target:  5'- cGAACuuGuCGCccgGCUCGCGCAGCUu-- -3'
miRNA:   3'- -CUUGggCcGCG---CGAGCGUGUUGAuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.