miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26586 3' -55.4 NC_005357.1 + 41746 0.66 0.636672
Target:  5'- cGGCCCGGCcgGCGC-CGCcguagGCGGCcugGUGg -3'
miRNA:   3'- cUUGGGCCG--CGCGaGCG-----UGUUGa--UAC- -5'
26586 3' -55.4 NC_005357.1 + 38854 0.74 0.230846
Target:  5'- uGACCCGGCGCG-UCGCugAAauUUAUGc -3'
miRNA:   3'- cUUGGGCCGCGCgAGCGugUU--GAUAC- -5'
26586 3' -55.4 NC_005357.1 + 38389 0.74 0.218737
Target:  5'- -cGCCCGGCuGCGCUCgacccGCGCGGC-AUGa -3'
miRNA:   3'- cuUGGGCCG-CGCGAG-----CGUGUUGaUAC- -5'
26586 3' -55.4 NC_005357.1 + 38270 0.66 0.614105
Target:  5'- cGACCaCGGCGCGCaaggUGgGCGGCUu-- -3'
miRNA:   3'- cUUGG-GCCGCGCGa---GCgUGUUGAuac -5'
26586 3' -55.4 NC_005357.1 + 38041 0.68 0.461887
Target:  5'- aGGCCCGGCGCGacggCGCcUGGCUGc- -3'
miRNA:   3'- cUUGGGCCGCGCga--GCGuGUUGAUac -5'
26586 3' -55.4 NC_005357.1 + 37837 0.67 0.525238
Target:  5'- uGACCUGG-GCGgcaUCGCAUAACUAg- -3'
miRNA:   3'- cUUGGGCCgCGCg--AGCGUGUUGAUac -5'
26586 3' -55.4 NC_005357.1 + 37758 0.67 0.558142
Target:  5'- -uAUCCGGCGCGCUggugccCGC-CAACa--- -3'
miRNA:   3'- cuUGGGCCGCGCGA------GCGuGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 36690 0.75 0.17079
Target:  5'- -uGCCCGGCGCGCU-GgGCGAuCUGUGc -3'
miRNA:   3'- cuUGGGCCGCGCGAgCgUGUU-GAUAC- -5'
26586 3' -55.4 NC_005357.1 + 34657 0.66 0.614105
Target:  5'- uGGACgCCGGCGCagaUCGCGCcgguGCUGc- -3'
miRNA:   3'- -CUUG-GGCCGCGcg-AGCGUGu---UGAUac -5'
26586 3' -55.4 NC_005357.1 + 33207 0.7 0.384186
Target:  5'- -cGCCgGGCGCGC-CGCAgAACg--- -3'
miRNA:   3'- cuUGGgCCGCGCGaGCGUgUUGauac -5'
26586 3' -55.4 NC_005357.1 + 32041 1.07 0.000872
Target:  5'- uGAACCCGGCGCGCUCGCACAACUAUGc -3'
miRNA:   3'- -CUUGGGCCGCGCGAGCGUGUUGAUAC- -5'
26586 3' -55.4 NC_005357.1 + 31481 0.7 0.393418
Target:  5'- --cCCCGGCuGuCGC-CGCGCAACUGc- -3'
miRNA:   3'- cuuGGGCCG-C-GCGaGCGUGUUGAUac -5'
26586 3' -55.4 NC_005357.1 + 31230 0.73 0.243517
Target:  5'- aGAAcCCCGGCGCGCg-GCcCAGCUAc- -3'
miRNA:   3'- -CUU-GGGCCGCGCGagCGuGUUGAUac -5'
26586 3' -55.4 NC_005357.1 + 29427 0.66 0.602841
Target:  5'- -uGCCCa-CGCGCUCGCACGucGCg--- -3'
miRNA:   3'- cuUGGGccGCGCGAGCGUGU--UGauac -5'
26586 3' -55.4 NC_005357.1 + 29139 0.68 0.472177
Target:  5'- --cCCCGGCGCGCU-GCAauCGGCgcUGa -3'
miRNA:   3'- cuuGGGCCGCGCGAgCGU--GUUGauAC- -5'
26586 3' -55.4 NC_005357.1 + 28757 0.67 0.536131
Target:  5'- cAGCgCGGUGCGCUucucggcgCGCACGGCg--- -3'
miRNA:   3'- cUUGgGCCGCGCGA--------GCGUGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 28312 0.74 0.201593
Target:  5'- aGAACUCGGCGCGCUCgGCGuCGgACUcgAUGg -3'
miRNA:   3'- -CUUGGGCCGCGCGAG-CGU-GU-UGA--UAC- -5'
26586 3' -55.4 NC_005357.1 + 27887 0.68 0.461887
Target:  5'- --uCuuGGCGUGCUCGCcCAGCa--- -3'
miRNA:   3'- cuuGggCCGCGCGAGCGuGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 26272 0.67 0.558142
Target:  5'- cGGCCUGGuCG-GCUCGCGCAucgcGCgcgAUGg -3'
miRNA:   3'- cUUGGGCC-GCgCGAGCGUGU----UGa--UAC- -5'
26586 3' -55.4 NC_005357.1 + 25860 0.67 0.547102
Target:  5'- --gUCCGGCGCGUcgCGCuACAACg--- -3'
miRNA:   3'- cuuGGGCCGCGCGa-GCG-UGUUGauac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.