Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26586 | 3' | -55.4 | NC_005357.1 | + | 32041 | 1.07 | 0.000872 |
Target: 5'- uGAACCCGGCGCGCUCGCACAACUAUGc -3' miRNA: 3'- -CUUGGGCCGCGCGAGCGUGUUGAUAC- -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 20100 | 0.79 | 0.105209 |
Target: 5'- aGAACUCGGCGCGUUCgGCACGGCc--- -3' miRNA: 3'- -CUUGGGCCGCGCGAG-CGUGUUGauac -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 36690 | 0.75 | 0.17079 |
Target: 5'- -uGCCCGGCGCGCU-GgGCGAuCUGUGc -3' miRNA: 3'- cuUGGGCCGCGCGAgCgUGUU-GAUAC- -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 18914 | 0.75 | 0.17079 |
Target: 5'- -cGCCUggaaGGCGCGCUCGCGgAACUGc- -3' miRNA: 3'- cuUGGG----CCGCGCGAGCGUgUUGAUac -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 28312 | 0.74 | 0.201593 |
Target: 5'- aGAACUCGGCGCGCUCgGCGuCGgACUcgAUGg -3' miRNA: 3'- -CUUGGGCCGCGCGAG-CGU-GU-UGA--UAC- -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 38389 | 0.74 | 0.218737 |
Target: 5'- -cGCCCGGCuGCGCUCgacccGCGCGGC-AUGa -3' miRNA: 3'- cuUGGGCCG-CGCGAG-----CGUGUUGaUAC- -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 3180 | 0.74 | 0.224722 |
Target: 5'- aAGCCCGGCGUccGCUgCGUACAGCUu-- -3' miRNA: 3'- cUUGGGCCGCG--CGA-GCGUGUUGAuac -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 38854 | 0.74 | 0.230846 |
Target: 5'- uGACCCGGCGCG-UCGCugAAauUUAUGc -3' miRNA: 3'- cUUGGGCCGCGCgAGCGugUU--GAUAC- -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 31230 | 0.73 | 0.243517 |
Target: 5'- aGAAcCCCGGCGCGCg-GCcCAGCUAc- -3' miRNA: 3'- -CUU-GGGCCGCGCGagCGuGUUGAUac -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 2743 | 0.72 | 0.292442 |
Target: 5'- cGGCCCGGCGCuGCUCGgGCGugccgaccACUGc- -3' miRNA: 3'- cUUGGGCCGCG-CGAGCgUGU--------UGAUac -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 15010 | 0.72 | 0.307765 |
Target: 5'- cGGGCgCGGUGCGCcaggCGCGCGACg--- -3' miRNA: 3'- -CUUGgGCCGCGCGa---GCGUGUUGauac -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 33207 | 0.7 | 0.384186 |
Target: 5'- -cGCCgGGCGCGC-CGCAgAACg--- -3' miRNA: 3'- cuUGGgCCGCGCGaGCGUgUUGauac -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 31481 | 0.7 | 0.393418 |
Target: 5'- --cCCCGGCuGuCGC-CGCGCAACUGc- -3' miRNA: 3'- cuuGGGCCG-C-GCGaGCGUGUUGAUac -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 17289 | 0.69 | 0.451716 |
Target: 5'- cGAAgCCGGCGcCGCgggCGCGCAuccauuccgGCaUAUGg -3' miRNA: 3'- -CUUgGGCCGC-GCGa--GCGUGU---------UG-AUAC- -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 38041 | 0.68 | 0.461887 |
Target: 5'- aGGCCCGGCGCGacggCGCcUGGCUGc- -3' miRNA: 3'- cUUGGGCCGCGCga--GCGuGUUGAUac -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 27887 | 0.68 | 0.461887 |
Target: 5'- --uCuuGGCGUGCUCGCcCAGCa--- -3' miRNA: 3'- cuuGggCCGCGCGAGCGuGUUGauac -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 29139 | 0.68 | 0.472177 |
Target: 5'- --cCCCGGCGCGCU-GCAauCGGCgcUGa -3' miRNA: 3'- cuuGGGCCGCGCGAgCGU--GUUGauAC- -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 1129 | 0.68 | 0.482582 |
Target: 5'- cGGCCCGGUGUaaccguuaGCUCGCGCuACg--- -3' miRNA: 3'- cUUGGGCCGCG--------CGAGCGUGuUGauac -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 18352 | 0.68 | 0.493096 |
Target: 5'- -uGCCCcGCGCGgUCGcCGCuACUGUGc -3' miRNA: 3'- cuUGGGcCGCGCgAGC-GUGuUGAUAC- -5' |
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26586 | 3' | -55.4 | NC_005357.1 | + | 22961 | 0.68 | 0.493096 |
Target: 5'- -cACCUGGCGCaa--GCugAACUAUGg -3' miRNA: 3'- cuUGGGCCGCGcgagCGugUUGAUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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