miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26586 3' -55.4 NC_005357.1 + 28757 0.67 0.536131
Target:  5'- cAGCgCGGUGCGCUucucggcgCGCACGGCg--- -3'
miRNA:   3'- cUUGgGCCGCGCGA--------GCGUGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 12355 0.67 0.536131
Target:  5'- -cGCCCGG-GCGC-CGCACAAa---- -3'
miRNA:   3'- cuUGGGCCgCGCGaGCGUGUUgauac -5'
26586 3' -55.4 NC_005357.1 + 17347 0.67 0.525238
Target:  5'- -cGCCgGGCGCGCUgCGCugGgugGCgAUGc -3'
miRNA:   3'- cuUGGgCCGCGCGA-GCGugU---UGaUAC- -5'
26586 3' -55.4 NC_005357.1 + 37837 0.67 0.525238
Target:  5'- uGACCUGG-GCGgcaUCGCAUAACUAg- -3'
miRNA:   3'- cUUGGGCCgCGCg--AGCGUGUUGAUac -5'
26586 3' -55.4 NC_005357.1 + 7092 0.68 0.514431
Target:  5'- -uACCCacGGCGCGCccacgCGCACGAUg--- -3'
miRNA:   3'- cuUGGG--CCGCGCGa----GCGUGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 18352 0.68 0.493096
Target:  5'- -uGCCCcGCGCGgUCGcCGCuACUGUGc -3'
miRNA:   3'- cuUGGGcCGCGCgAGC-GUGuUGAUAC- -5'
26586 3' -55.4 NC_005357.1 + 22961 0.68 0.493096
Target:  5'- -cACCUGGCGCaa--GCugAACUAUGg -3'
miRNA:   3'- cuUGGGCCGCGcgagCGugUUGAUAC- -5'
26586 3' -55.4 NC_005357.1 + 1129 0.68 0.482582
Target:  5'- cGGCCCGGUGUaaccguuaGCUCGCGCuACg--- -3'
miRNA:   3'- cUUGGGCCGCG--------CGAGCGUGuUGauac -5'
26586 3' -55.4 NC_005357.1 + 29139 0.68 0.472177
Target:  5'- --cCCCGGCGCGCU-GCAauCGGCgcUGa -3'
miRNA:   3'- cuuGGGCCGCGCGAgCGU--GUUGauAC- -5'
26586 3' -55.4 NC_005357.1 + 38041 0.68 0.461887
Target:  5'- aGGCCCGGCGCGacggCGCcUGGCUGc- -3'
miRNA:   3'- cUUGGGCCGCGCga--GCGuGUUGAUac -5'
26586 3' -55.4 NC_005357.1 + 27887 0.68 0.461887
Target:  5'- --uCuuGGCGUGCUCGCcCAGCa--- -3'
miRNA:   3'- cuuGggCCGCGCGAGCGuGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 17289 0.69 0.451716
Target:  5'- cGAAgCCGGCGcCGCgggCGCGCAuccauuccgGCaUAUGg -3'
miRNA:   3'- -CUUgGGCCGC-GCGa--GCGUGU---------UG-AUAC- -5'
26586 3' -55.4 NC_005357.1 + 31481 0.7 0.393418
Target:  5'- --cCCCGGCuGuCGC-CGCGCAACUGc- -3'
miRNA:   3'- cuuGGGCCG-C-GCGaGCGUGUUGAUac -5'
26586 3' -55.4 NC_005357.1 + 33207 0.7 0.384186
Target:  5'- -cGCCgGGCGCGC-CGCAgAACg--- -3'
miRNA:   3'- cuUGGgCCGCGCGaGCGUgUUGauac -5'
26586 3' -55.4 NC_005357.1 + 15010 0.72 0.307765
Target:  5'- cGGGCgCGGUGCGCcaggCGCGCGACg--- -3'
miRNA:   3'- -CUUGgGCCGCGCGa---GCGUGUUGauac -5'
26586 3' -55.4 NC_005357.1 + 2743 0.72 0.292442
Target:  5'- cGGCCCGGCGCuGCUCGgGCGugccgaccACUGc- -3'
miRNA:   3'- cUUGGGCCGCG-CGAGCgUGU--------UGAUac -5'
26586 3' -55.4 NC_005357.1 + 31230 0.73 0.243517
Target:  5'- aGAAcCCCGGCGCGCg-GCcCAGCUAc- -3'
miRNA:   3'- -CUU-GGGCCGCGCGagCGuGUUGAUac -5'
26586 3' -55.4 NC_005357.1 + 38854 0.74 0.230846
Target:  5'- uGACCCGGCGCG-UCGCugAAauUUAUGc -3'
miRNA:   3'- cUUGGGCCGCGCgAGCGugUU--GAUAC- -5'
26586 3' -55.4 NC_005357.1 + 3180 0.74 0.224722
Target:  5'- aAGCCCGGCGUccGCUgCGUACAGCUu-- -3'
miRNA:   3'- cUUGGGCCGCG--CGA-GCGUGUUGAuac -5'
26586 3' -55.4 NC_005357.1 + 38389 0.74 0.218737
Target:  5'- -cGCCCGGCuGCGCUCgacccGCGCGGC-AUGa -3'
miRNA:   3'- cuUGGGCCG-CGCGAG-----CGUGUUGaUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.