miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26588 3' -56 NC_005357.1 + 32288 1.06 0.000828
Target:  5'- aAAACACCAGCGCGUUGCGCGACCUCAu -3'
miRNA:   3'- -UUUGUGGUCGCGCAACGCGCUGGAGU- -5'
26588 3' -56 NC_005357.1 + 23509 0.86 0.024947
Target:  5'- aAAACGCCAGCGCGg-GCGcCGACCUCAu -3'
miRNA:   3'- -UUUGUGGUCGCGCaaCGC-GCUGGAGU- -5'
26588 3' -56 NC_005357.1 + 12304 0.79 0.087968
Target:  5'- ---gGCCGGCgGCGUguucugGCGCGGCCUCAu -3'
miRNA:   3'- uuugUGGUCG-CGCAa-----CGCGCUGGAGU- -5'
26588 3' -56 NC_005357.1 + 7931 0.77 0.109208
Target:  5'- cGAACACCGGCGCGaggauuuccgacagcUUGCccGUGGCCUCGg -3'
miRNA:   3'- -UUUGUGGUCGCGC---------------AACG--CGCUGGAGU- -5'
26588 3' -56 NC_005357.1 + 19891 0.76 0.124747
Target:  5'- cAACACCGgcacgcGCGCGcUGCGCGugCUCGc -3'
miRNA:   3'- uUUGUGGU------CGCGCaACGCGCugGAGU- -5'
26588 3' -56 NC_005357.1 + 31990 0.75 0.156724
Target:  5'- cGACGCCAGCGUccUGUGCGAaacCCUCGa -3'
miRNA:   3'- uUUGUGGUCGCGcaACGCGCU---GGAGU- -5'
26588 3' -56 NC_005357.1 + 12213 0.74 0.175357
Target:  5'- --uCGCCgAGUGCG-UGCGCGugCUCAa -3'
miRNA:   3'- uuuGUGG-UCGCGCaACGCGCugGAGU- -5'
26588 3' -56 NC_005357.1 + 18061 0.74 0.185394
Target:  5'- --uUACCGGCGCGggGUGCGugCUgGg -3'
miRNA:   3'- uuuGUGGUCGCGCaaCGCGCugGAgU- -5'
26588 3' -56 NC_005357.1 + 34314 0.73 0.206997
Target:  5'- cAACGCCGGcCGCGcgGUGCagGGCCUCAa -3'
miRNA:   3'- uUUGUGGUC-GCGCaaCGCG--CUGGAGU- -5'
26588 3' -56 NC_005357.1 + 7767 0.73 0.206997
Target:  5'- cAGCACCGGCGCGaucUGCGcCGGCgUCc -3'
miRNA:   3'- uUUGUGGUCGCGCa--ACGC-GCUGgAGu -5'
26588 3' -56 NC_005357.1 + 24736 0.73 0.224599
Target:  5'- --cCACC-GCGCc-UGCGCGGCCUCGa -3'
miRNA:   3'- uuuGUGGuCGCGcaACGCGCUGGAGU- -5'
26588 3' -56 NC_005357.1 + 30922 0.72 0.237027
Target:  5'- -cACGCCAGCGCag-GCGCGcCCUUu -3'
miRNA:   3'- uuUGUGGUCGCGcaaCGCGCuGGAGu -5'
26588 3' -56 NC_005357.1 + 17232 0.72 0.243454
Target:  5'- ---gGCCAGCG-GUcGCGCGugCUCAu -3'
miRNA:   3'- uuugUGGUCGCgCAaCGCGCugGAGU- -5'
26588 3' -56 NC_005357.1 + 4879 0.72 0.250026
Target:  5'- -uGC-CCAGCGCGgcGacgGCGGCCUCGu -3'
miRNA:   3'- uuUGuGGUCGCGCaaCg--CGCUGGAGU- -5'
26588 3' -56 NC_005357.1 + 4675 0.72 0.250026
Target:  5'- cGGGCACCAGCGCGccggauaGCGCGGCg--- -3'
miRNA:   3'- -UUUGUGGUCGCGCaa-----CGCGCUGgagu -5'
26588 3' -56 NC_005357.1 + 28680 0.71 0.277783
Target:  5'- --uCGCCAGCGCGgcGCGCcACgUCGu -3'
miRNA:   3'- uuuGUGGUCGCGCaaCGCGcUGgAGU- -5'
26588 3' -56 NC_005357.1 + 18973 0.71 0.300174
Target:  5'- -cACGCCGGCGUGUacGCGCGAaCCa-- -3'
miRNA:   3'- uuUGUGGUCGCGCAa-CGCGCU-GGagu -5'
26588 3' -56 NC_005357.1 + 21159 0.71 0.307942
Target:  5'- -cGCGCCcugguucaacAGCGCGgccugcUGCGCGGCCUg- -3'
miRNA:   3'- uuUGUGG----------UCGCGCa-----ACGCGCUGGAgu -5'
26588 3' -56 NC_005357.1 + 14678 0.7 0.323935
Target:  5'- cGGACGagggCAGCGaGUUGCGCGaggGCCUCAu -3'
miRNA:   3'- -UUUGUg---GUCGCgCAACGCGC---UGGAGU- -5'
26588 3' -56 NC_005357.1 + 9870 0.7 0.34907
Target:  5'- uGGCACCGGCGCGcUGCuucuCGGCCa-- -3'
miRNA:   3'- uUUGUGGUCGCGCaACGc---GCUGGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.