Results 1 - 20 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26588 | 3' | -56 | NC_005357.1 | + | 23468 | 0.67 | 0.504763 |
Target: 5'- -cACGCCGGCGUGgaacaggUGCGCcgugggaaucucGACCUg- -3' miRNA: 3'- uuUGUGGUCGCGCa------ACGCG------------CUGGAgu -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 13017 | 0.69 | 0.375563 |
Target: 5'- --cCGCgCAGCGCaGUgGCGaCGGCCUCGu -3' miRNA: 3'- uuuGUG-GUCGCG-CAaCGC-GCUGGAGU- -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 33776 | 0.69 | 0.403382 |
Target: 5'- -uGCACaCAGCGaGUacgGCGCGGCCUgGg -3' miRNA: 3'- uuUGUG-GUCGCgCAa--CGCGCUGGAgU- -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 17598 | 0.68 | 0.422637 |
Target: 5'- uAAACGgCuGCGCGUUGuCGauacCGGCCUCGa -3' miRNA: 3'- -UUUGUgGuCGCGCAAC-GC----GCUGGAGU- -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 27485 | 0.68 | 0.442435 |
Target: 5'- -cGCACCA-CGCGaggaUGCcgGCGGCCUCGg -3' miRNA: 3'- uuUGUGGUcGCGCa---ACG--CGCUGGAGU- -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 8740 | 0.68 | 0.462745 |
Target: 5'- gGGACACCAGgGCGc-GCGCGuauucacgugccGCUUCGg -3' miRNA: 3'- -UUUGUGGUCgCGCaaCGCGC------------UGGAGU- -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 36690 | 0.68 | 0.462745 |
Target: 5'- -uGC-CCGGCGCGcUGgGCGAUCUg- -3' miRNA: 3'- uuUGuGGUCGCGCaACgCGCUGGAgu -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 1447 | 0.68 | 0.462745 |
Target: 5'- cAAACACCuucuugacGGCGCGgucgGCGGCCUCc -3' miRNA: 3'- -UUUGUGG--------UCGCGCaacgCGCUGGAGu -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 20292 | 0.67 | 0.504763 |
Target: 5'- -cGCACCaguAGCGgGUUGCucgGCGGCCg-- -3' miRNA: 3'- uuUGUGG---UCGCgCAACG---CGCUGGagu -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 12392 | 0.69 | 0.375563 |
Target: 5'- cGAUGCCuGCGCGcUUGUauGCGGCCUUg -3' miRNA: 3'- uUUGUGGuCGCGC-AACG--CGCUGGAGu -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 9870 | 0.7 | 0.34907 |
Target: 5'- uGGCACCGGCGCGcUGCuucuCGGCCa-- -3' miRNA: 3'- uUUGUGGUCGCGCaACGc---GCUGGagu -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 21159 | 0.71 | 0.307942 |
Target: 5'- -cGCGCCcugguucaacAGCGCGgccugcUGCGCGGCCUg- -3' miRNA: 3'- uuUGUGG----------UCGCGCa-----ACGCGCUGGAgu -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 7931 | 0.77 | 0.109208 |
Target: 5'- cGAACACCGGCGCGaggauuuccgacagcUUGCccGUGGCCUCGg -3' miRNA: 3'- -UUUGUGGUCGCGC---------------AACG--CGCUGGAGU- -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 31990 | 0.75 | 0.156724 |
Target: 5'- cGACGCCAGCGUccUGUGCGAaacCCUCGa -3' miRNA: 3'- uUUGUGGUCGCGcaACGCGCU---GGAGU- -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 18061 | 0.74 | 0.185394 |
Target: 5'- --uUACCGGCGCGggGUGCGugCUgGg -3' miRNA: 3'- uuuGUGGUCGCGCaaCGCGCugGAgU- -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 7767 | 0.73 | 0.206997 |
Target: 5'- cAGCACCGGCGCGaucUGCGcCGGCgUCc -3' miRNA: 3'- uUUGUGGUCGCGCa--ACGC-GCUGgAGu -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 24736 | 0.73 | 0.224599 |
Target: 5'- --cCACC-GCGCc-UGCGCGGCCUCGa -3' miRNA: 3'- uuuGUGGuCGCGcaACGCGCUGGAGU- -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 4675 | 0.72 | 0.250026 |
Target: 5'- cGGGCACCAGCGCGccggauaGCGCGGCg--- -3' miRNA: 3'- -UUUGUGGUCGCGCaa-----CGCGCUGgagu -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 4879 | 0.72 | 0.250026 |
Target: 5'- -uGC-CCAGCGCGgcGacgGCGGCCUCGu -3' miRNA: 3'- uuUGuGGUCGCGCaaCg--CGCUGGAGU- -5' |
|||||||
26588 | 3' | -56 | NC_005357.1 | + | 28680 | 0.71 | 0.277783 |
Target: 5'- --uCGCCAGCGCGgcGCGCcACgUCGu -3' miRNA: 3'- uuuGUGGUCGCGCaaCGCGcUGgAGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home