Results 1 - 20 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 112731 | 0.66 | 0.99285 |
Target: 5'- cGGUGGgggaguagagauuccUGGGugGCUUgucgcGACAGACc- -3' miRNA: 3'- aCCGCU---------------ACCUugCGAAa----CUGUCUGcg -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 119884 | 0.66 | 0.992435 |
Target: 5'- cGGCGuaAUGuGGACGCUguUUGAC-GACa- -3' miRNA: 3'- aCCGC--UAC-CUUGCGA--AACUGuCUGcg -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 18475 | 0.66 | 0.992435 |
Target: 5'- gGGUGGUGGAAacucCUUUGGCcuauccuGGCGUc -3' miRNA: 3'- aCCGCUACCUUgc--GAAACUGu------CUGCG- -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 3559 | 0.66 | 0.992328 |
Target: 5'- aGGCGGgagaggGGAucuCGCUggggUccaguccggggacGGCGGACGCc -3' miRNA: 3'- aCCGCUa-----CCUu--GCGAa---A-------------CUGUCUGCG- -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 135281 | 0.66 | 0.991313 |
Target: 5'- aGGCGGgacUGGGuCGCc-UGGCAGcacuGCGCu -3' miRNA: 3'- aCCGCU---ACCUuGCGaaACUGUC----UGCG- -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 87767 | 0.66 | 0.991313 |
Target: 5'- gGGCGAaGGAGuCGUagggguaGACGGACcGCg -3' miRNA: 3'- aCCGCUaCCUU-GCGaaa----CUGUCUG-CG- -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 1451 | 0.66 | 0.990063 |
Target: 5'- cGGCGG-GGAGC-CUcggUGAUGGGCaGCa -3' miRNA: 3'- aCCGCUaCCUUGcGAa--ACUGUCUG-CG- -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 85130 | 0.66 | 0.986656 |
Target: 5'- gGGCGGUGG-GCGUgucgggaaaaacacGugGGACGUa -3' miRNA: 3'- aCCGCUACCuUGCGaaa-----------CugUCUGCG- -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 104588 | 0.67 | 0.983608 |
Target: 5'- cGGCGAaucugGGAGCGguaCUUUG-CAGGCa- -3' miRNA: 3'- aCCGCUa----CCUUGC---GAAACuGUCUGcg -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 25461 | 0.67 | 0.981584 |
Target: 5'- gGGCGAggaGGAAccCGCg--GACGaGCGCu -3' miRNA: 3'- aCCGCUa--CCUU--GCGaaaCUGUcUGCG- -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 93336 | 0.67 | 0.979378 |
Target: 5'- uUGGU--UGGAGC-CaUUGAUGGGCGCa -3' miRNA: 3'- -ACCGcuACCUUGcGaAACUGUCUGCG- -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 53883 | 0.68 | 0.961876 |
Target: 5'- gGGcCGcUGGAgGCGCa--GGCAGGCGCc -3' miRNA: 3'- aCC-GCuACCU-UGCGaaaCUGUCUGCG- -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 132841 | 0.69 | 0.958181 |
Target: 5'- gGGCGccaGAGCGUgcggGAUAGAUGCg -3' miRNA: 3'- aCCGCuacCUUGCGaaa-CUGUCUGCG- -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 9652 | 0.69 | 0.950072 |
Target: 5'- gGGCGAggucgggGGAaaGCGUgaaUGACAG-CGCc -3' miRNA: 3'- aCCGCUa------CCU--UGCGaa-ACUGUCuGCG- -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 137042 | 0.69 | 0.950072 |
Target: 5'- aGGCGA-GGcGCGCUguUUGGgAG-CGCa -3' miRNA: 3'- aCCGCUaCCuUGCGA--AACUgUCuGCG- -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 46580 | 0.69 | 0.950072 |
Target: 5'- aGGCGcucaccuccuuGUGGGACGagu--ACAGGCGCg -3' miRNA: 3'- aCCGC-----------UACCUUGCgaaacUGUCUGCG- -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 142666 | 0.69 | 0.940977 |
Target: 5'- aGGCGGUGGaAGCGUUUguUGuC-GACGUg -3' miRNA: 3'- aCCGCUACC-UUGCGAA--ACuGuCUGCG- -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 32015 | 0.69 | 0.940977 |
Target: 5'- cGGCGGUgGGGACGCggccGACccGGuCGCc -3' miRNA: 3'- aCCGCUA-CCUUGCGaaa-CUG--UCuGCG- -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 43778 | 0.69 | 0.940977 |
Target: 5'- gGGCGA-GGAcGCGCUgcgaccGCAGACGa -3' miRNA: 3'- aCCGCUaCCU-UGCGAaac---UGUCUGCg -5' |
|||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 2216 | 0.69 | 0.940977 |
Target: 5'- aGGCG-UGGGAcCGCUUgGugAgGAUGCg -3' miRNA: 3'- aCCGCuACCUU-GCGAAaCugU-CUGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home