Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2659 | 3' | -51.3 | NC_001491.2 | + | 63304 | 0.7 | 0.913811 |
Target: 5'- uUGGCGGUGuGggUgaGCUUgggcggGGgAGGCGCa -3' miRNA: 3'- -ACCGCUAC-CuuG--CGAAa-----CUgUCUGCG- -5' |
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2659 | 3' | -51.3 | NC_001491.2 | + | 85130 | 0.66 | 0.986656 |
Target: 5'- gGGCGGUGG-GCGUgucgggaaaaacacGugGGACGUa -3' miRNA: 3'- aCCGCUACCuUGCGaaa-----------CugUCUGCG- -5' |
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2659 | 3' | -51.3 | NC_001491.2 | + | 87767 | 0.66 | 0.991313 |
Target: 5'- gGGCGAaGGAGuCGUagggguaGACGGACcGCg -3' miRNA: 3'- aCCGCUaCCUU-GCGaaa----CUGUCUG-CG- -5' |
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2659 | 3' | -51.3 | NC_001491.2 | + | 89359 | 1.12 | 0.004938 |
Target: 5'- cUGGCGAUGGAACGCUUUGACAGACGCu -3' miRNA: 3'- -ACCGCUACCUUGCGAAACUGUCUGCG- -5' |
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2659 | 3' | -51.3 | NC_001491.2 | + | 93336 | 0.67 | 0.979378 |
Target: 5'- uUGGU--UGGAGC-CaUUGAUGGGCGCa -3' miRNA: 3'- -ACCGcuACCUUGcGaAACUGUCUGCG- -5' |
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2659 | 3' | -51.3 | NC_001491.2 | + | 95629 | 0.71 | 0.894476 |
Target: 5'- cGGCGggGGAugGUgg-GGCGGAaaGCa -3' miRNA: 3'- aCCGCuaCCUugCGaaaCUGUCUg-CG- -5' |
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2659 | 3' | -51.3 | NC_001491.2 | + | 103988 | 0.69 | 0.940977 |
Target: 5'- aGGCGGUGGcgucUGgUUUGcCGGugGCg -3' miRNA: 3'- aCCGCUACCuu--GCgAAACuGUCugCG- -5' |
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2659 | 3' | -51.3 | NC_001491.2 | + | 104175 | 0.72 | 0.849348 |
Target: 5'- aUGGCGGUcGGAAUGUcc--GCGGGCGCc -3' miRNA: 3'- -ACCGCUA-CCUUGCGaaacUGUCUGCG- -5' |
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2659 | 3' | -51.3 | NC_001491.2 | + | 104588 | 0.67 | 0.983608 |
Target: 5'- cGGCGAaucugGGAGCGguaCUUUG-CAGGCa- -3' miRNA: 3'- aCCGCUa----CCUUGC---GAAACuGUCUGcg -5' |
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2659 | 3' | -51.3 | NC_001491.2 | + | 112731 | 0.66 | 0.99285 |
Target: 5'- cGGUGGgggaguagagauuccUGGGugGCUUgucgcGACAGACc- -3' miRNA: 3'- aCCGCU---------------ACCUugCGAAa----CUGUCUGcg -5' |
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2659 | 3' | -51.3 | NC_001491.2 | + | 119884 | 0.66 | 0.992435 |
Target: 5'- cGGCGuaAUGuGGACGCUguUUGAC-GACa- -3' miRNA: 3'- aCCGC--UAC-CUUGCGA--AACUGuCUGcg -5' |
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2659 | 3' | -51.3 | NC_001491.2 | + | 132841 | 0.69 | 0.958181 |
Target: 5'- gGGCGccaGAGCGUgcggGAUAGAUGCg -3' miRNA: 3'- aCCGCuacCUUGCGaaa-CUGUCUGCG- -5' |
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2659 | 3' | -51.3 | NC_001491.2 | + | 135281 | 0.66 | 0.991313 |
Target: 5'- aGGCGGgacUGGGuCGCc-UGGCAGcacuGCGCu -3' miRNA: 3'- aCCGCU---ACCUuGCGaaACUGUC----UGCG- -5' |
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2659 | 3' | -51.3 | NC_001491.2 | + | 136318 | 0.74 | 0.738389 |
Target: 5'- gGGCGGUGGcAGCGC-----CAGACGCu -3' miRNA: 3'- aCCGCUACC-UUGCGaaacuGUCUGCG- -5' |
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2659 | 3' | -51.3 | NC_001491.2 | + | 137042 | 0.69 | 0.950072 |
Target: 5'- aGGCGA-GGcGCGCUguUUGGgAG-CGCa -3' miRNA: 3'- aCCGCUaCCuUGCGA--AACUgUCuGCG- -5' |
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2659 | 3' | -51.3 | NC_001491.2 | + | 139561 | 0.77 | 0.57122 |
Target: 5'- aUGuGCGAgccagGGucuGCGCUUUGAcCAGGCGCc -3' miRNA: 3'- -AC-CGCUa----CCu--UGCGAAACU-GUCUGCG- -5' |
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2659 | 3' | -51.3 | NC_001491.2 | + | 142666 | 0.69 | 0.940977 |
Target: 5'- aGGCGGUGGaAGCGUUUguUGuC-GACGUg -3' miRNA: 3'- aCCGCUACC-UUGCGAA--ACuGuCUGCG- -5' |
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2659 | 3' | -51.3 | NC_001491.2 | + | 148300 | 0.73 | 0.823865 |
Target: 5'- gUGGgGAUcGGAGCGCgacGAgUAGACGCc -3' miRNA: 3'- -ACCgCUA-CCUUGCGaaaCU-GUCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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