miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26590 5' -58.1 NC_005357.1 + 4795 0.69 0.341264
Target:  5'- cCAGcACGCCgGCUGGCGCUGcgggauugcUGGCCGg -3'
miRNA:   3'- aGUCcUGUGG-CGGCUGCGAC---------ACUGGU- -5'
26590 5' -58.1 NC_005357.1 + 6719 0.66 0.459715
Target:  5'- aCGGuGAaaaGCCGCUG-CGCUG-GGCCGc -3'
miRNA:   3'- aGUC-CUg--UGGCGGCuGCGACaCUGGU- -5'
26590 5' -58.1 NC_005357.1 + 8284 0.69 0.317253
Target:  5'- cCAGGGCcacGCUGCCGGgGCaGUGcaGCCAg -3'
miRNA:   3'- aGUCCUG---UGGCGGCUgCGaCAC--UGGU- -5'
26590 5' -58.1 NC_005357.1 + 8650 0.71 0.252946
Target:  5'- cCAGGccGCGCCGUacuCGCUGUGugCAg -3'
miRNA:   3'- aGUCC--UGUGGCGgcuGCGACACugGU- -5'
26590 5' -58.1 NC_005357.1 + 9183 0.66 0.50035
Target:  5'- aCuuGGCGCCGUCGACGU--UGGCCu -3'
miRNA:   3'- aGucCUGUGGCGGCUGCGacACUGGu -5'
26590 5' -58.1 NC_005357.1 + 9344 0.66 0.469713
Target:  5'- -gAGGAUguagGCCGCCGcguCGCUGcgcGACCc -3'
miRNA:   3'- agUCCUG----UGGCGGCu--GCGACa--CUGGu -5'
26590 5' -58.1 NC_005357.1 + 10446 0.71 0.259527
Target:  5'- aCAGGACGCUGgCGucgaguuCGCguuccGUGACCAg -3'
miRNA:   3'- aGUCCUGUGGCgGCu------GCGa----CACUGGU- -5'
26590 5' -58.1 NC_005357.1 + 11508 0.67 0.402249
Target:  5'- -aAGGGCAgCGCCuGCGCUGgcgugaGGCCc -3'
miRNA:   3'- agUCCUGUgGCGGcUGCGACa-----CUGGu -5'
26590 5' -58.1 NC_005357.1 + 13185 0.66 0.479822
Target:  5'- gCuGGGCGCCcuugGCCGGCGUUGUacGCCu -3'
miRNA:   3'- aGuCCUGUGG----CGGCUGCGACAc-UGGu -5'
26590 5' -58.1 NC_005357.1 + 14896 0.66 0.50035
Target:  5'- uUCAGGGuCugCGCggCGAucUGCUGcUGGCCGg -3'
miRNA:   3'- -AGUCCU-GugGCG--GCU--GCGAC-ACUGGU- -5'
26590 5' -58.1 NC_005357.1 + 14993 0.74 0.16537
Target:  5'- cCAGGGCcugcgGCCGCCgGGCGCgGUGcGCCAg -3'
miRNA:   3'- aGUCCUG-----UGGCGG-CUGCGaCAC-UGGU- -5'
26590 5' -58.1 NC_005357.1 + 16897 0.66 0.479822
Target:  5'- -gGGGGCGCUGCCGGCgGCggcaaaaccGACCu -3'
miRNA:   3'- agUCCUGUGGCGGCUG-CGaca------CUGGu -5'
26590 5' -58.1 NC_005357.1 + 18254 0.67 0.405937
Target:  5'- cUCAuGGACacgccgaagcgcgcaGCCGUCGagGCGCUG-GGCCAg -3'
miRNA:   3'- -AGU-CCUG---------------UGGCGGC--UGCGACaCUGGU- -5'
26590 5' -58.1 NC_005357.1 + 18735 0.69 0.325113
Target:  5'- aCGGGAUGCCGUCGAaCGC---GACCAc -3'
miRNA:   3'- aGUCCUGUGGCGGCU-GCGacaCUGGU- -5'
26590 5' -58.1 NC_005357.1 + 19308 0.66 0.459715
Target:  5'- gUCAGGAgccguUACCGCUGuCGCcGUGggcGCCGc -3'
miRNA:   3'- -AGUCCU-----GUGGCGGCuGCGaCAC---UGGU- -5'
26590 5' -58.1 NC_005357.1 + 23963 0.78 0.077488
Target:  5'- aUCGGccGACGCCGCCGGCGCcGcGACCGu -3'
miRNA:   3'- -AGUC--CUGUGGCGGCUGCGaCaCUGGU- -5'
26590 5' -58.1 NC_005357.1 + 28082 0.67 0.44983
Target:  5'- gCAGGugGCCGCggcgucguauucCGuCGCgGUGAUCGu -3'
miRNA:   3'- aGUCCugUGGCG------------GCuGCGaCACUGGU- -5'
26590 5' -58.1 NC_005357.1 + 30133 0.71 0.240197
Target:  5'- ---cGACGCCGCCGuagccggcACGCUG-GGCCAg -3'
miRNA:   3'- agucCUGUGGCGGC--------UGCGACaCUGGU- -5'
26590 5' -58.1 NC_005357.1 + 30172 0.74 0.160915
Target:  5'- cCAGGACacuACCGCCGAuccguucgaugcCGCUGUuGCCGg -3'
miRNA:   3'- aGUCCUG---UGGCGGCU------------GCGACAcUGGU- -5'
26590 5' -58.1 NC_005357.1 + 30417 0.67 0.402249
Target:  5'- --cGGcCACgGCCG-CGCUGcUGGCCGa -3'
miRNA:   3'- aguCCuGUGgCGGCuGCGAC-ACUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.