Results 1 - 20 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 32579 | 1.09 | 0.000383 |
Target: 5'- aUCAGGACACCGCCGACGCUGUGACCAa -3' miRNA: 3'- -AGUCCUGUGGCGGCUGCGACACUGGU- -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 14896 | 0.66 | 0.50035 |
Target: 5'- uUCAGGGuCugCGCggCGAucUGCUGcUGGCCGg -3' miRNA: 3'- -AGUCCU-GugGCG--GCU--GCGAC-ACUGGU- -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 9183 | 0.66 | 0.50035 |
Target: 5'- aCuuGGCGCCGUCGACGU--UGGCCu -3' miRNA: 3'- aGucCUGUGGCGGCUGCGacACUGGu -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 13185 | 0.66 | 0.479822 |
Target: 5'- gCuGGGCGCCcuugGCCGGCGUUGUacGCCu -3' miRNA: 3'- aGuCCUGUGG----CGGCUGCGACAc-UGGu -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 39597 | 0.66 | 0.469713 |
Target: 5'- ---uGGCGCCGCUG-CGC-GUGGCCGc -3' miRNA: 3'- agucCUGUGGCGGCuGCGaCACUGGU- -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 6719 | 0.66 | 0.459715 |
Target: 5'- aCGGuGAaaaGCCGCUG-CGCUG-GGCCGc -3' miRNA: 3'- aGUC-CUg--UGGCGGCuGCGACaCUGGU- -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 28082 | 0.67 | 0.44983 |
Target: 5'- gCAGGugGCCGCggcgucguauucCGuCGCgGUGAUCGu -3' miRNA: 3'- aGUCCugUGGCG------------GCuGCGaCACUGGU- -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 11508 | 0.67 | 0.402249 |
Target: 5'- -aAGGGCAgCGCCuGCGCUGgcgugaGGCCc -3' miRNA: 3'- agUCCUGUgGCGGcUGCGACa-----CUGGu -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 4795 | 0.69 | 0.341264 |
Target: 5'- cCAGcACGCCgGCUGGCGCUGcgggauugcUGGCCGg -3' miRNA: 3'- aGUCcUGUGG-CGGCUGCGAC---------ACUGGU- -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 18735 | 0.69 | 0.325113 |
Target: 5'- aCGGGAUGCCGUCGAaCGC---GACCAc -3' miRNA: 3'- aGUCCUGUGGCGGCU-GCGacaCUGGU- -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 35692 | 0.7 | 0.273107 |
Target: 5'- -uGGGGCGCCaagGCCGACGCcGUGcUCAa -3' miRNA: 3'- agUCCUGUGG---CGGCUGCGaCACuGGU- -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 37430 | 0.71 | 0.234026 |
Target: 5'- --cGGACugCGCCGACcuGCUGUucGCCAa -3' miRNA: 3'- aguCCUGugGCGGCUG--CGACAc-UGGU- -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 30133 | 0.71 | 0.240197 |
Target: 5'- ---cGACGCCGCCGuagccggcACGCUG-GGCCAg -3' miRNA: 3'- agucCUGUGGCGGC--------UGCGACaCUGGU- -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 40968 | 0.71 | 0.238952 |
Target: 5'- cCAGGAgGCCGCCGAcCGCgccgucaagaagGUGuuuGCCAu -3' miRNA: 3'- aGUCCUgUGGCGGCU-GCGa-----------CAC---UGGU- -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 37511 | 0.73 | 0.189339 |
Target: 5'- gCGGGcauCGCUGCCGACGUUuccaccGUGGCCGa -3' miRNA: 3'- aGUCCu--GUGGCGGCUGCGA------CACUGGU- -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 38976 | 0.73 | 0.169935 |
Target: 5'- uUCGGGGCG-CG-CGGCGuCUGUGACCAc -3' miRNA: 3'- -AGUCCUGUgGCgGCUGC-GACACUGGU- -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 14993 | 0.74 | 0.16537 |
Target: 5'- cCAGGGCcugcgGCCGCCgGGCGCgGUGcGCCAg -3' miRNA: 3'- aGUCCUG-----UGGCGG-CUGCGaCAC-UGGU- -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 30172 | 0.74 | 0.160915 |
Target: 5'- cCAGGACacuACCGCCGAuccguucgaugcCGCUGUuGCCGg -3' miRNA: 3'- aGUCCUG---UGGCGGCU------------GCGACAcUGGU- -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 41808 | 0.75 | 0.129015 |
Target: 5'- --cGGACGCCGUguccaCGGCGCUGcUGGCCGa -3' miRNA: 3'- aguCCUGUGGCG-----GCUGCGAC-ACUGGU- -5' |
|||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 39532 | 0.66 | 0.50035 |
Target: 5'- aUCGGGGCG-CG-CGGCGuCUGUGcCCAu -3' miRNA: 3'- -AGUCCUGUgGCgGCUGC-GACACuGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home