Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26592 | 3' | -54.8 | NC_005357.1 | + | 33723 | 1.13 | 0.000401 |
Target: 5'- uUCGUGUUCGGCAGCAAUCUGCGCGGCg -3' miRNA: 3'- -AGCACAAGCCGUCGUUAGACGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 19076 | 0.81 | 0.079609 |
Target: 5'- cCGUGUucaUCGGCGGCGAggccgucgaaUUGCGCGGCu -3' miRNA: 3'- aGCACA---AGCCGUCGUUa---------GACGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 38543 | 0.78 | 0.137983 |
Target: 5'- ---aGUUCGGCGGCGAcggCaGCGCGGCc -3' miRNA: 3'- agcaCAAGCCGUCGUUa--GaCGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 13628 | 0.78 | 0.137983 |
Target: 5'- aUCGguagCGGCAGCaAGUCcgGCGCGGCc -3' miRNA: 3'- -AGCacaaGCCGUCG-UUAGa-CGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 31208 | 0.77 | 0.150217 |
Target: 5'- gCGUGggCGGgaacgUGGCGGUCaUGCGCGGCa -3' miRNA: 3'- aGCACaaGCC-----GUCGUUAG-ACGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 7677 | 0.76 | 0.187781 |
Target: 5'- cCGUucUUUGGCGGCGAUCUGCGgcCGGUa -3' miRNA: 3'- aGCAc-AAGCCGUCGUUAGACGC--GCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 10868 | 0.74 | 0.252738 |
Target: 5'- gCGUGgcuucggUCGGC-GCGAUgcGCGCGGCg -3' miRNA: 3'- aGCACa------AGCCGuCGUUAgaCGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 9544 | 0.73 | 0.273406 |
Target: 5'- --cUGUUCGGCcaguGCGAUCUGCucgccgGUGGCg -3' miRNA: 3'- agcACAAGCCGu---CGUUAGACG------CGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 7210 | 0.72 | 0.310826 |
Target: 5'- gCGaUGUccaCGGCAGC-AUCUGCGCcGCg -3' miRNA: 3'- aGC-ACAa--GCCGUCGuUAGACGCGcCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 485 | 0.72 | 0.310826 |
Target: 5'- gUCGgaugccUCGGCAGCAuaCUGCgccGCGGCg -3' miRNA: 3'- -AGCaca---AGCCGUCGUuaGACG---CGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 12298 | 0.72 | 0.310826 |
Target: 5'- -gGUGcaggcCGGCGGCGuguUCUgGCGCGGCc -3' miRNA: 3'- agCACaa---GCCGUCGUu--AGA-CGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 7535 | 0.71 | 0.352015 |
Target: 5'- cCGUGcgcUCGGCGGCGugcUCgaucCGCGGCg -3' miRNA: 3'- aGCACa--AGCCGUCGUu--AGac--GCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 9310 | 0.71 | 0.360704 |
Target: 5'- cUCGgcgaccUGGCGGCGcacGUCgGCGCGGCg -3' miRNA: 3'- -AGCacaa--GCCGUCGU---UAGaCGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 25743 | 0.71 | 0.369541 |
Target: 5'- cCGg---CGGCAGCAcgCUGgGCGcGCu -3' miRNA: 3'- aGCacaaGCCGUCGUuaGACgCGC-CG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 7772 | 0.71 | 0.378525 |
Target: 5'- ------cCGGC-GCGAUCUGCGcCGGCg -3' miRNA: 3'- agcacaaGCCGuCGUUAGACGC-GCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 1350 | 0.71 | 0.378525 |
Target: 5'- cCGUGgUCGGCGGCc--UUGCGCauccGGCg -3' miRNA: 3'- aGCACaAGCCGUCGuuaGACGCG----CCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 37277 | 0.7 | 0.445361 |
Target: 5'- gCGUGa---GCAGCGAcggccgcCUGCGCGGCa -3' miRNA: 3'- aGCACaagcCGUCGUUa------GACGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 9847 | 0.7 | 0.445361 |
Target: 5'- cUCGguUUCGGCGuCGAUgaGCGUGGCa -3' miRNA: 3'- -AGCacAAGCCGUcGUUAgaCGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 422 | 0.7 | 0.449378 |
Target: 5'- -gGUGaucgUCGGCcguaccuugucguugGGCug-CUGCGCGGCc -3' miRNA: 3'- agCACa---AGCCG---------------UCGuuaGACGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 34043 | 0.69 | 0.46564 |
Target: 5'- aCGUG---GGCGGCGAuUCUcgaagauucgaGCGCGGCg -3' miRNA: 3'- aGCACaagCCGUCGUU-AGA-----------CGCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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