miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26592 3' -54.8 NC_005357.1 + 422 0.7 0.449378
Target:  5'- -gGUGaucgUCGGCcguaccuugucguugGGCug-CUGCGCGGCc -3'
miRNA:   3'- agCACa---AGCCG---------------UCGuuaGACGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 485 0.72 0.310826
Target:  5'- gUCGgaugccUCGGCAGCAuaCUGCgccGCGGCg -3'
miRNA:   3'- -AGCaca---AGCCGUCGUuaGACG---CGCCG- -5'
26592 3' -54.8 NC_005357.1 + 1350 0.71 0.378525
Target:  5'- cCGUGgUCGGCGGCc--UUGCGCauccGGCg -3'
miRNA:   3'- aGCACaAGCCGUCGuuaGACGCG----CCG- -5'
26592 3' -54.8 NC_005357.1 + 2423 0.66 0.652932
Target:  5'- -gGUGUaCGGCAGCAggccggccucgaagAUCgGCGCcacgauguugcacaaGGCg -3'
miRNA:   3'- agCACAaGCCGUCGU--------------UAGaCGCG---------------CCG- -5'
26592 3' -54.8 NC_005357.1 + 4480 0.68 0.518299
Target:  5'- cCGUGUucuugUCGGUaucgacGGUAAUCUcacGgGCGGCg -3'
miRNA:   3'- aGCACA-----AGCCG------UCGUUAGA---CgCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 4916 0.68 0.562056
Target:  5'- -gGUGgaaacgUCGGCAGCGAUgCccGCGaCGGUc -3'
miRNA:   3'- agCACa-----AGCCGUCGUUA-Ga-CGC-GCCG- -5'
26592 3' -54.8 NC_005357.1 + 5334 0.68 0.562056
Target:  5'- aCGUGgc--GCAGCAuggcaucgcgCUGCGUGGCc -3'
miRNA:   3'- aGCACaagcCGUCGUua--------GACGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 7210 0.72 0.310826
Target:  5'- gCGaUGUccaCGGCAGC-AUCUGCGCcGCg -3'
miRNA:   3'- aGC-ACAa--GCCGUCGuUAGACGCGcCG- -5'
26592 3' -54.8 NC_005357.1 + 7535 0.71 0.352015
Target:  5'- cCGUGcgcUCGGCGGCGugcUCgaucCGCGGCg -3'
miRNA:   3'- aGCACa--AGCCGUCGUu--AGac--GCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 7677 0.76 0.187781
Target:  5'- cCGUucUUUGGCGGCGAUCUGCGgcCGGUa -3'
miRNA:   3'- aGCAc-AAGCCGUCGUUAGACGC--GCCG- -5'
26592 3' -54.8 NC_005357.1 + 7772 0.71 0.378525
Target:  5'- ------cCGGC-GCGAUCUGCGcCGGCg -3'
miRNA:   3'- agcacaaGCCGuCGUUAGACGC-GCCG- -5'
26592 3' -54.8 NC_005357.1 + 8139 0.69 0.496926
Target:  5'- gUUGUGggCGuGCGGguGUCgGCGCuGCg -3'
miRNA:   3'- -AGCACaaGC-CGUCguUAGaCGCGcCG- -5'
26592 3' -54.8 NC_005357.1 + 8202 0.66 0.629274
Target:  5'- uUCGUcagcgacaUGGCGGcCAGUUcgUGCGCGGCc -3'
miRNA:   3'- -AGCAcaa-----GCCGUC-GUUAG--ACGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 9310 0.71 0.360704
Target:  5'- cUCGgcgaccUGGCGGCGcacGUCgGCGCGGCg -3'
miRNA:   3'- -AGCacaa--GCCGUCGU---UAGaCGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 9544 0.73 0.273406
Target:  5'- --cUGUUCGGCcaguGCGAUCUGCucgccgGUGGCg -3'
miRNA:   3'- agcACAAGCCGu---CGUUAGACG------CGCCG- -5'
26592 3' -54.8 NC_005357.1 + 9847 0.7 0.445361
Target:  5'- cUCGguUUCGGCGuCGAUgaGCGUGGCa -3'
miRNA:   3'- -AGCacAAGCCGUcGUUAgaCGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 10076 0.67 0.584321
Target:  5'- cUCGgcggCGaccGCAGCGAcCUGgGCGGCg -3'
miRNA:   3'- -AGCacaaGC---CGUCGUUaGACgCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 10868 0.74 0.252738
Target:  5'- gCGUGgcuucggUCGGC-GCGAUgcGCGCGGCg -3'
miRNA:   3'- aGCACa------AGCCGuCGUUAgaCGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 12253 0.66 0.640545
Target:  5'- aUCGaacgGaUCGGCGGUAGUgucCUGgGCGGg -3'
miRNA:   3'- -AGCa---CaAGCCGUCGUUA---GACgCGCCg -5'
26592 3' -54.8 NC_005357.1 + 12298 0.72 0.310826
Target:  5'- -gGUGcaggcCGGCGGCGuguUCUgGCGCGGCc -3'
miRNA:   3'- agCACaa---GCCGUCGUu--AGA-CGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.