miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26592 3' -54.8 NC_005357.1 + 42067 0.66 0.629274
Target:  5'- uUCGUGUUCucgggccuGGCGGaCGGccugCUGCGCGacGCc -3'
miRNA:   3'- -AGCACAAG--------CCGUC-GUUa---GACGCGC--CG- -5'
26592 3' -54.8 NC_005357.1 + 41616 0.68 0.507565
Target:  5'- ---cGUUCGGCaagGGCugg--GCGCGGCg -3'
miRNA:   3'- agcaCAAGCCG---UCGuuagaCGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 41594 0.66 0.674264
Target:  5'- aCGg--UCGGCucGCugucUCUGCGCGcGCu -3'
miRNA:   3'- aGCacaAGCCGu-CGuu--AGACGCGC-CG- -5'
26592 3' -54.8 NC_005357.1 + 40283 0.66 0.651807
Target:  5'- aCGUGUaCGGCGGCGcggUUGaC-CGGCu -3'
miRNA:   3'- aGCACAaGCCGUCGUua-GAC-GcGCCG- -5'
26592 3' -54.8 NC_005357.1 + 38885 0.66 0.674264
Target:  5'- gCGg--UUGGCGGgA--CUGCGCGGUg -3'
miRNA:   3'- aGCacaAGCCGUCgUuaGACGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 38543 0.78 0.137983
Target:  5'- ---aGUUCGGCGGCGAcggCaGCGCGGCc -3'
miRNA:   3'- agcaCAAGCCGUCGUUa--GaCGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 37277 0.7 0.445361
Target:  5'- gCGUGa---GCAGCGAcggccgcCUGCGCGGCa -3'
miRNA:   3'- aGCACaagcCGUCGUUa------GACGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 34429 0.68 0.540028
Target:  5'- uUCGUgcGUUCGGCAaaCGA---GCGCGGCg -3'
miRNA:   3'- -AGCA--CAAGCCGUc-GUUagaCGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 34043 0.69 0.46564
Target:  5'- aCGUG---GGCGGCGAuUCUcgaagauucgaGCGCGGCg -3'
miRNA:   3'- aGCACaagCCGUCGUU-AGA-----------CGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 33723 1.13 0.000401
Target:  5'- uUCGUGUUCGGCAGCAAUCUGCGCGGCg -3'
miRNA:   3'- -AGCACAAGCCGUCGUUAGACGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 31208 0.77 0.150217
Target:  5'- gCGUGggCGGgaacgUGGCGGUCaUGCGCGGCa -3'
miRNA:   3'- aGCACaaGCC-----GUCGUUAG-ACGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 30415 0.68 0.562056
Target:  5'- uUCGc--UCGGCauGGCGAUgaGCGCGGg -3'
miRNA:   3'- -AGCacaAGCCG--UCGUUAgaCGCGCCg -5'
26592 3' -54.8 NC_005357.1 + 28664 0.69 0.46564
Target:  5'- aUCG-GUgcCGGCGGCc-UCgccaGCGCGGCg -3'
miRNA:   3'- -AGCaCAa-GCCGUCGuuAGa---CGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 28139 0.67 0.618007
Target:  5'- gUCGgg--CGGCAGCAGcUUGC-CGGUg -3'
miRNA:   3'- -AGCacaaGCCGUCGUUaGACGcGCCG- -5'
26592 3' -54.8 NC_005357.1 + 27212 0.66 0.66305
Target:  5'- aUCGUGUcgaugUCGGCGGaAAUC-GCcauCGGCg -3'
miRNA:   3'- -AGCACA-----AGCCGUCgUUAGaCGc--GCCG- -5'
26592 3' -54.8 NC_005357.1 + 26661 0.67 0.584321
Target:  5'- gUCGUGcgucgcaccaUUGGCGGCAA-CgagGUGCGGUa -3'
miRNA:   3'- -AGCACa---------AGCCGUCGUUaGa--CGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 26605 0.67 0.59552
Target:  5'- gCGUGUUCG--AGUc--CUGCGCGGUg -3'
miRNA:   3'- aGCACAAGCcgUCGuuaGACGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 26129 0.69 0.475958
Target:  5'- aUGUGUUCGucGCGGCAGaUUUGgcgcaGCGGCu -3'
miRNA:   3'- aGCACAAGC--CGUCGUU-AGACg----CGCCG- -5'
26592 3' -54.8 NC_005357.1 + 25766 0.67 0.600009
Target:  5'- cUGcUGggCGGCGGCAA-CgauggccgcgaugcGCGCGGCg -3'
miRNA:   3'- aGC-ACaaGCCGUCGUUaGa-------------CGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 25743 0.71 0.369541
Target:  5'- cCGg---CGGCAGCAcgCUGgGCGcGCu -3'
miRNA:   3'- aGCacaaGCCGUCGUuaGACgCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.