miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26592 3' -54.8 NC_005357.1 + 12403 0.68 0.562056
Target:  5'- -gGUGUggGGCAcCAAgg-GCGCGGCc -3'
miRNA:   3'- agCACAagCCGUcGUUagaCGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 12546 0.68 0.551009
Target:  5'- cUCGgcgUCGGUgaauuucuugccGGCcucgcgCUGCGCGGCg -3'
miRNA:   3'- -AGCacaAGCCG------------UCGuua---GACGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 13628 0.78 0.137983
Target:  5'- aUCGguagCGGCAGCaAGUCcgGCGCGGCc -3'
miRNA:   3'- -AGCacaaGCCGUCG-UUAGa-CGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 14627 0.67 0.59552
Target:  5'- gCGaGgaCGuGCuGCGG-CUGCGCGGCg -3'
miRNA:   3'- aGCaCaaGC-CGuCGUUaGACGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 14659 0.66 0.68432
Target:  5'- uUCGUGUacgugUCcgagccggacgagGGCAGCGAgUUGCGCgagGGCc -3'
miRNA:   3'- -AGCACA-----AG-------------CCGUCGUUaGACGCG---CCG- -5'
26592 3' -54.8 NC_005357.1 + 14719 0.68 0.518299
Target:  5'- --aUGacCGGCGGCGAgccgCUGC-CGGCg -3'
miRNA:   3'- agcACaaGCCGUCGUUa---GACGcGCCG- -5'
26592 3' -54.8 NC_005357.1 + 14884 0.67 0.618007
Target:  5'- ---aGUUgccCGGCuuuCAggGUCUGCGCGGCg -3'
miRNA:   3'- agcaCAA---GCCGuc-GU--UAGACGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 16220 0.66 0.66305
Target:  5'- aCGUGagCaGCAGCAAcUCgGUgaGCGGCa -3'
miRNA:   3'- aGCACaaGcCGUCGUU-AGaCG--CGCCG- -5'
26592 3' -54.8 NC_005357.1 + 17641 0.67 0.618007
Target:  5'- aUCGUG--CGGCAGUacggccacGAUCUugaugGCGuCGGCg -3'
miRNA:   3'- -AGCACaaGCCGUCG--------UUAGA-----CGC-GCCG- -5'
26592 3' -54.8 NC_005357.1 + 18653 0.69 0.496926
Target:  5'- uUCGUGaUCGGgGGCGGUCgcccGCcccCGGCc -3'
miRNA:   3'- -AGCACaAGCCgUCGUUAGa---CGc--GCCG- -5'
26592 3' -54.8 NC_005357.1 + 18811 0.69 0.466667
Target:  5'- -gGUGaUCuGGCGGCGcaggaagcugcgaauUUUGCGCGGCa -3'
miRNA:   3'- agCACaAG-CCGUCGUu--------------AGACGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 19076 0.81 0.079609
Target:  5'- cCGUGUucaUCGGCGGCGAggccgucgaaUUGCGCGGCu -3'
miRNA:   3'- aGCACA---AGCCGUCGUUa---------GACGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 21152 0.69 0.469754
Target:  5'- cCGUGUccgCGcccugguucaacagcGCGGCcugCUGCGCGGCc -3'
miRNA:   3'- aGCACAa--GC---------------CGUCGuuaGACGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 21573 0.67 0.573163
Target:  5'- cUCGUGccgcucggccacUUCGGUGGCGgucAUCUGCGgauUGGUg -3'
miRNA:   3'- -AGCAC------------AAGCCGUCGU---UAGACGC---GCCG- -5'
26592 3' -54.8 NC_005357.1 + 22677 0.67 0.593277
Target:  5'- cUCGUGgccggcaacaaCGGCaaccagcccaAGCAGggcgaUGCGCGGCg -3'
miRNA:   3'- -AGCACaa---------GCCG----------UCGUUag---ACGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 24625 0.66 0.66305
Target:  5'- cCGUGca-GGCGG-AAUaCUGCGCGcGCu -3'
miRNA:   3'- aGCACaagCCGUCgUUA-GACGCGC-CG- -5'
26592 3' -54.8 NC_005357.1 + 25484 0.66 0.674264
Target:  5'- ------aCGGCGGCAcgCUGCuggaCGGCg -3'
miRNA:   3'- agcacaaGCCGUCGUuaGACGc---GCCG- -5'
26592 3' -54.8 NC_005357.1 + 25743 0.71 0.369541
Target:  5'- cCGg---CGGCAGCAcgCUGgGCGcGCu -3'
miRNA:   3'- aGCacaaGCCGUCGUuaGACgCGC-CG- -5'
26592 3' -54.8 NC_005357.1 + 25766 0.67 0.600009
Target:  5'- cUGcUGggCGGCGGCAA-CgauggccgcgaugcGCGCGGCg -3'
miRNA:   3'- aGC-ACaaGCCGUCGUUaGa-------------CGCGCCG- -5'
26592 3' -54.8 NC_005357.1 + 26129 0.69 0.475958
Target:  5'- aUGUGUUCGucGCGGCAGaUUUGgcgcaGCGGCu -3'
miRNA:   3'- aGCACAAGC--CGUCGUU-AGACg----CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.