miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26592 5' -62.1 NC_005357.1 + 24117 0.66 0.264846
Target:  5'- -uGCGcGCGUAGgggucguagucCAGCCgGCUGCGCGCc -3'
miRNA:   3'- ccCGC-CGCGUC-----------GUCGG-CGACGUGUGu -5'
26592 5' -62.1 NC_005357.1 + 24302 0.7 0.144143
Target:  5'- gGGGCGGUgaggucgGCgAGCAGCCGCggGuCAgGCGg -3'
miRNA:   3'- -CCCGCCG-------CG-UCGUCGGCGa-C-GUgUGU- -5'
26592 5' -62.1 NC_005357.1 + 25620 0.73 0.095427
Target:  5'- cGGCGGCGCGGUcGCCaGCaGCGCGu- -3'
miRNA:   3'- cCCGCCGCGUCGuCGG-CGaCGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 25723 0.7 0.162847
Target:  5'- cGGCGGggucgucguccucacCgGCGGCAGCaCGCUGgGCGCGc -3'
miRNA:   3'- cCCGCC---------------G-CGUCGUCG-GCGACgUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 25770 0.74 0.076154
Target:  5'- uGGGCGGCgGCAaCgauGGCCGCgaUGCGCGCGg -3'
miRNA:   3'- -CCCGCCG-CGUcG---UCGGCG--ACGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 26141 0.67 0.251772
Target:  5'- cGGCagauuuGGCGCAGCGGCuCGCcgucugcgaUGCGguCGCAg -3'
miRNA:   3'- cCCG------CCGCGUCGUCG-GCG---------ACGU--GUGU- -5'
26592 5' -62.1 NC_005357.1 + 26363 0.68 0.204732
Target:  5'- cGGCGccgcGCGCGGCGGCCaCgUGCGCGa- -3'
miRNA:   3'- cCCGC----CGCGUCGUCGGcG-ACGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 27451 0.68 0.199419
Target:  5'- aGGCccuGGCGCugguaugccAGCGcGCCGC-GCACGCAc -3'
miRNA:   3'- cCCG---CCGCG---------UCGU-CGGCGaCGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 27521 0.66 0.271586
Target:  5'- aGGcCGGCcaGCAGCAGaUCGCcGCGCAg- -3'
miRNA:   3'- cCC-GCCG--CGUCGUC-GGCGaCGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 27794 0.68 0.194226
Target:  5'- -aGCGcGCGCcgcGCAGCCGCaGCACGu- -3'
miRNA:   3'- ccCGC-CGCGu--CGUCGGCGaCGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 27839 0.71 0.126025
Target:  5'- cGGUGGCGcCGGCcgcGCCGCUGCuCAa- -3'
miRNA:   3'- cCCGCCGC-GUCGu--CGGCGACGuGUgu -5'
26592 5' -62.1 NC_005357.1 + 28141 0.73 0.092786
Target:  5'- cGGGCGGCaGCAGCuuGCCGgUGguCAg- -3'
miRNA:   3'- -CCCGCCG-CGUCGu-CGGCgACguGUgu -5'
26592 5' -62.1 NC_005357.1 + 29569 0.66 0.292634
Target:  5'- gGGGUaucGCGUcaGGuCGGCCGCgcccagGCGCGCGg -3'
miRNA:   3'- -CCCGc--CGCG--UC-GUCGGCGa-----CGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 29951 0.68 0.199419
Target:  5'- aGGUGGUGCuuGUcGUCGCgGCGCACGa -3'
miRNA:   3'- cCCGCCGCGu-CGuCGGCGaCGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 30520 0.69 0.170007
Target:  5'- aGGUGGCGCAGCuucucGaccaCGCUGUAuCGCGg -3'
miRNA:   3'- cCCGCCGCGUCGu----Cg---GCGACGU-GUGU- -5'
26592 5' -62.1 NC_005357.1 + 30841 0.66 0.28548
Target:  5'- cGGCGGCcagcCGGCGGCC-CUGgGCGgCAu -3'
miRNA:   3'- cCCGCCGc---GUCGUCGGcGACgUGU-GU- -5'
26592 5' -62.1 NC_005357.1 + 31286 0.72 0.106718
Target:  5'- aGGCGGCccaGCAGCAgGCCGaaCUGCuCGCAc -3'
miRNA:   3'- cCCGCCG---CGUCGU-CGGC--GACGuGUGU- -5'
26592 5' -62.1 NC_005357.1 + 33032 0.69 0.179354
Target:  5'- -cGCGGCcugcgcgacauGCAGUGGCUGCacaaUGCACGCGg -3'
miRNA:   3'- ccCGCCG-----------CGUCGUCGGCG----ACGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 33757 1.09 0.000117
Target:  5'- uGGGCGGCGCAGCAGCCGCUGCACACAg -3'
miRNA:   3'- -CCCGCCGCGUCGUCGGCGACGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 34074 0.68 0.210168
Target:  5'- cGGCGGCGCAGgaGGUacugGCaugaGCACGCAc -3'
miRNA:   3'- cCCGCCGCGUCg-UCGg---CGa---CGUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.