miRNA display CGI


Results 21 - 40 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26592 5' -62.1 NC_005357.1 + 14724 0.74 0.080591
Target:  5'- cGGCGGCG-AGCcGCUGCcgGCGCGCGg -3'
miRNA:   3'- cCCGCCGCgUCGuCGGCGa-CGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 14852 0.69 0.1655
Target:  5'- uGGCGGC-CAGCGccGCaCGCUGgGCGCc -3'
miRNA:   3'- cCCGCCGcGUCGU--CG-GCGACgUGUGu -5'
26592 5' -62.1 NC_005357.1 + 14899 0.67 0.258241
Target:  5'- aGGGUcuGCGCGGCGauCUGCUGCugGCc -3'
miRNA:   3'- -CCCGc-CGCGUCGUc-GGCGACGugUGu -5'
26592 5' -62.1 NC_005357.1 + 14960 0.67 0.251772
Target:  5'- -cGUGGUGCguGGCGGCgCGCUGgCAUACc -3'
miRNA:   3'- ccCGCCGCG--UCGUCG-GCGAC-GUGUGu -5'
26592 5' -62.1 NC_005357.1 + 15606 0.74 0.074025
Target:  5'- gGGGCGGCGCAGCcuGCCaaaaaCaGCACGCc -3'
miRNA:   3'- -CCCGCCGCGUCGu-CGGc----GaCGUGUGu -5'
26592 5' -62.1 NC_005357.1 + 15888 0.68 0.204732
Target:  5'- cGGGCacguaggugaGGCccaGCAGCuuGCCGCUGCuGCugAu -3'
miRNA:   3'- -CCCG----------CCG---CGUCGu-CGGCGACG-UGugU- -5'
26592 5' -62.1 NC_005357.1 + 16052 0.7 0.161099
Target:  5'- aGGCcaguucGCGCAcGUGGCCGCcGCGCGCGg -3'
miRNA:   3'- cCCGc-----CGCGU-CGUCGGCGaCGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 16092 0.69 0.170007
Target:  5'- -aGCGGCGCGGcCAGuUCGCgGUGCGCGu -3'
miRNA:   3'- ccCGCCGCGUC-GUC-GGCGaCGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 16822 0.75 0.0624
Target:  5'- aGGCGGCGCAGUucaCGCgGCGCAUAg -3'
miRNA:   3'- cCCGCCGCGUCGucgGCGaCGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 17706 0.66 0.264846
Target:  5'- cGGGcCGGgaaaugcccauCGCGGCAa--GCUGCGCGCAu -3'
miRNA:   3'- -CCC-GCC-----------GCGUCGUcggCGACGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 18291 0.71 0.115998
Target:  5'- uGGGCcaGGCGC-GCAGCCgGCUGgACuACGa -3'
miRNA:   3'- -CCCG--CCGCGuCGUCGG-CGACgUG-UGU- -5'
26592 5' -62.1 NC_005357.1 + 18342 0.67 0.245437
Target:  5'- gGGGUGcccgugccccGCGCGGUcGCCGCuacUGUGCGCGg -3'
miRNA:   3'- -CCCGC----------CGCGUCGuCGGCG---ACGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 18680 0.78 0.035087
Target:  5'- cGGUGGCGcCGGCAuggcGCUGCUGCGCGCc -3'
miRNA:   3'- cCCGCCGC-GUCGU----CGGCGACGUGUGu -5'
26592 5' -62.1 NC_005357.1 + 18818 0.72 0.100924
Target:  5'- uGGCGGCGCAGgaAGCUGCgaauuuUGCGCGgCAu -3'
miRNA:   3'- cCCGCCGCGUCg-UCGGCG------ACGUGU-GU- -5'
26592 5' -62.1 NC_005357.1 + 20213 0.69 0.184195
Target:  5'- uGGCaGCGCccGCGGCCGgCUGUugGCc -3'
miRNA:   3'- cCCGcCGCGu-CGUCGGC-GACGugUGu -5'
26592 5' -62.1 NC_005357.1 + 21256 0.69 0.191168
Target:  5'- aGGCcGCGCAGCAgGCCGCgcuguugaaccaggGCGCGg- -3'
miRNA:   3'- cCCGcCGCGUCGU-CGGCGa-------------CGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 22246 0.67 0.239235
Target:  5'- aGGGCGaCGacaaGGCgaAGCCGCaagGCGCACc -3'
miRNA:   3'- -CCCGCcGCg---UCG--UCGGCGa--CGUGUGu -5'
26592 5' -62.1 NC_005357.1 + 23535 0.66 0.299928
Target:  5'- aGGCGGCGCAcGCGGUCGaugGC-CuCGg -3'
miRNA:   3'- cCCGCCGCGU-CGUCGGCga-CGuGuGU- -5'
26592 5' -62.1 NC_005357.1 + 23652 0.7 0.148525
Target:  5'- cGGCGGCG-GGCAGCaaCUGCAC-CAg -3'
miRNA:   3'- cCCGCCGCgUCGUCGgcGACGUGuGU- -5'
26592 5' -62.1 NC_005357.1 + 23739 0.66 0.299928
Target:  5'- cGGUGGCGCgcAGCAGCgccaUGCcgGCGC-CAc -3'
miRNA:   3'- cCCGCCGCG--UCGUCG----GCGa-CGUGuGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.