Results 1 - 20 of 79 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 167 | 0.66 | 0.278464 |
Target: 5'- aGGCGGaUGCGccccGguGUCGCUGgGCACc -3' miRNA: 3'- cCCGCC-GCGU----CguCGGCGACgUGUGu -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 276 | 0.67 | 0.251772 |
Target: 5'- aGGCacGGCGUccAGUAGCUGCgccggaagGCGCGCu -3' miRNA: 3'- cCCG--CCGCG--UCGUCGGCGa-------CGUGUGu -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 418 | 0.66 | 0.288325 |
Target: 5'- cGGCGGUGaucguCGGCcguaccuugucguugGGCUGCUGCGCGg- -3' miRNA: 3'- cCCGCCGC-----GUCG---------------UCGGCGACGUGUgu -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 611 | 0.67 | 0.258241 |
Target: 5'- cGGGuCGGCcaGCAGC-GCCG-UGgACACGg -3' miRNA: 3'- -CCC-GCCG--CGUCGuCGGCgACgUGUGU- -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 2241 | 0.69 | 0.179354 |
Target: 5'- aGGCGGCGC-GUGGCCGC-GCAa--- -3' miRNA: 3'- cCCGCCGCGuCGUCGGCGaCGUgugu -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 3572 | 0.67 | 0.245437 |
Target: 5'- cGGGCugGGCGUAcaccgauccGCGGCCGCcagUGUugGCc -3' miRNA: 3'- -CCCG--CCGCGU---------CGUCGGCG---ACGugUGu -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 4512 | 0.66 | 0.264846 |
Target: 5'- cGGGCGGCGCccgugaacGUGGCgUGCUGgGCGg- -3' miRNA: 3'- -CCCGCCGCGu-------CGUCG-GCGACgUGUgu -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 5632 | 0.76 | 0.05727 |
Target: 5'- uGGcGCGGCGCAGCuugcuGGUgGCUGgACGCGg -3' miRNA: 3'- -CC-CGCCGCGUCG-----UCGgCGACgUGUGU- -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 6622 | 0.66 | 0.278464 |
Target: 5'- -aGCgGGCGC-GUGG-CGCUGCGCGCGg -3' miRNA: 3'- ccCG-CCGCGuCGUCgGCGACGUGUGU- -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 7703 | 0.67 | 0.251772 |
Target: 5'- cGGCGGC-CGGCuuGCCGaugaaCUGCAgCGCAc -3' miRNA: 3'- cCCGCCGcGUCGu-CGGC-----GACGU-GUGU- -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 7894 | 0.72 | 0.100081 |
Target: 5'- aGGGCGGCGCgugcguagaucgccAGCuGCuCGUUGCGCuCGg -3' miRNA: 3'- -CCCGCCGCG--------------UCGuCG-GCGACGUGuGU- -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 8300 | 0.7 | 0.152614 |
Target: 5'- gGGGCaGUGCAGcCAGCgG-UGCGCGCu -3' miRNA: 3'- -CCCGcCGCGUC-GUCGgCgACGUGUGu -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 8667 | 0.71 | 0.133151 |
Target: 5'- -cGCuGuGUGCAGCGGCUGCUGCGC-CGc -3' miRNA: 3'- ccCG-C-CGCGUCGUCGGCGACGUGuGU- -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 8739 | 0.68 | 0.194226 |
Target: 5'- cGGCgGGCGCGGCGcuaCCGUcaacauggaauuUGCGCGCGg -3' miRNA: 3'- cCCG-CCGCGUCGUc--GGCG------------ACGUGUGU- -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 8748 | 0.68 | 0.20366 |
Target: 5'- aGGGCGcGCGC-GUAuucacguGCCGCUucgggcaGCACGCGg -3' miRNA: 3'- -CCCGC-CGCGuCGU-------CGGCGA-------CGUGUGU- -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 9210 | 0.73 | 0.090215 |
Target: 5'- cGGCGGCGCGGCGcacguuCUGCgGCGCGCc -3' miRNA: 3'- cCCGCCGCGUCGUc-----GGCGaCGUGUGu -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 9341 | 0.7 | 0.156381 |
Target: 5'- cGGGCGGCggcauccuuuuGCAguugcuugaugauGCGGCCGCgUGCAUuguGCAg -3' miRNA: 3'- -CCCGCCG-----------CGU-------------CGUCGGCG-ACGUG---UGU- -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 9988 | 0.71 | 0.136851 |
Target: 5'- gGGGCGuaGgGGCAGUCGCUGC-CGu- -3' miRNA: 3'- -CCCGCcgCgUCGUCGGCGACGuGUgu -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 13324 | 0.66 | 0.299928 |
Target: 5'- aGGCGGCGUaggcuuucGGCAggucGCCGCcgaaGuCGCGCAa -3' miRNA: 3'- cCCGCCGCG--------UCGU----CGGCGa---C-GUGUGU- -5' |
|||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 14615 | 0.74 | 0.075509 |
Target: 5'- cGGGCaGCGCGcgcgaggacgugcuGCGGCUGCgcgGCGCGCGc -3' miRNA: 3'- -CCCGcCGCGU--------------CGUCGGCGa--CGUGUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home