miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26592 5' -62.1 NC_005357.1 + 42077 0.67 0.233164
Target:  5'- cGGGCcuGGCGgA-CGGCCuGCUGCGCGa- -3'
miRNA:   3'- -CCCG--CCGCgUcGUCGG-CGACGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 41937 0.67 0.233164
Target:  5'- -cGCGGCGCAGUAuGCUGCcgagGCAUcCGa -3'
miRNA:   3'- ccCGCCGCGUCGU-CGGCGa---CGUGuGU- -5'
26592 5' -62.1 NC_005357.1 + 41742 0.7 0.152614
Target:  5'- uGGGCGGCcCGGCcggcGCCGCcGUAgGCGg -3'
miRNA:   3'- -CCCGCCGcGUCGu---CGGCGaCGUgUGU- -5'
26592 5' -62.1 NC_005357.1 + 41287 0.73 0.092786
Target:  5'- cGGCGaGCGCAaaCGGCCGCUGCuCAUg -3'
miRNA:   3'- cCCGC-CGCGUc-GUCGGCGACGuGUGu -5'
26592 5' -62.1 NC_005357.1 + 40403 0.66 0.299928
Target:  5'- aGGCGGC-CGGUAuGCCGgUGCugGu- -3'
miRNA:   3'- cCCGCCGcGUCGU-CGGCgACGugUgu -5'
26592 5' -62.1 NC_005357.1 + 40290 0.82 0.016939
Target:  5'- cGGCGGCGCGGUugaccGGCUGCUGCACGa- -3'
miRNA:   3'- cCCGCCGCGUCG-----UCGGCGACGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 39849 0.67 0.233164
Target:  5'- aGGGCGGCaagcgcgcGCAcGCgcugGGCCGUgucGCACAUg -3'
miRNA:   3'- -CCCGCCG--------CGU-CG----UCGGCGa--CGUGUGu -5'
26592 5' -62.1 NC_005357.1 + 39588 0.66 0.264846
Target:  5'- -cGCuGGUGCuGGC-GCCGCUGCGCGu- -3'
miRNA:   3'- ccCG-CCGCG-UCGuCGGCGACGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 38850 0.68 0.204196
Target:  5'- uGGCGGcCGCGGaucgguguacgccCAGcCCGCUGCuGCGCu -3'
miRNA:   3'- cCCGCC-GCGUC-------------GUC-GGCGACG-UGUGu -5'
26592 5' -62.1 NC_005357.1 + 38579 0.66 0.278464
Target:  5'- uGGGCGGCG-AGguGC-GCaaagUGCGCugGa -3'
miRNA:   3'- -CCCGCCGCgUCguCGgCG----ACGUGugU- -5'
26592 5' -62.1 NC_005357.1 + 38547 0.7 0.144536
Target:  5'- cGGCGGCGaCGGCAGC-GCgGCcUACAg -3'
miRNA:   3'- cCCGCCGC-GUCGUCGgCGaCGuGUGU- -5'
26592 5' -62.1 NC_005357.1 + 37996 0.69 0.177923
Target:  5'- uGGCGGUGUuGCGGCCGgguacgaccuacgaCUGcCGCACGc -3'
miRNA:   3'- cCCGCCGCGuCGUCGGC--------------GAC-GUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 37274 0.71 0.122597
Target:  5'- aGGGCGuGaGCAGCgacGGCCGCcUGCGCgGCAc -3'
miRNA:   3'- -CCCGC-CgCGUCG---UCGGCG-ACGUG-UGU- -5'
26592 5' -62.1 NC_005357.1 + 37082 0.7 0.152614
Target:  5'- aGGCGGCcacGCAGCGcgauGCCauGCUGCGcCACGu -3'
miRNA:   3'- cCCGCCG---CGUCGU----CGG--CGACGU-GUGU- -5'
26592 5' -62.1 NC_005357.1 + 36089 0.69 0.189153
Target:  5'- cGGGCcgGGCGCuuuggcuggGGCGgaacgcGCCGCgucuUGCACGCAc -3'
miRNA:   3'- -CCCG--CCGCG---------UCGU------CGGCG----ACGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 36043 0.67 0.258241
Target:  5'- aGGGCGcCGCGGCGGCCGaccuggUGUAacccaGCGc -3'
miRNA:   3'- -CCCGCcGCGUCGUCGGCg-----ACGUg----UGU- -5'
26592 5' -62.1 NC_005357.1 + 35206 0.66 0.292634
Target:  5'- aGGGUGaGCGCGGCGcagauGCUGCcGUGgACAu -3'
miRNA:   3'- -CCCGC-CGCGUCGU-----CGGCGaCGUgUGU- -5'
26592 5' -62.1 NC_005357.1 + 34880 0.73 0.0829
Target:  5'- cGGUGGCGCcgcggaucgAGCAcGCCGCcgaGCGCACGg -3'
miRNA:   3'- cCCGCCGCG---------UCGU-CGGCGa--CGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 34643 0.67 0.258241
Target:  5'- uGGGCGGCGaagGGUGGaCGCcgGCGCAg- -3'
miRNA:   3'- -CCCGCCGCg--UCGUCgGCGa-CGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 34074 0.68 0.210168
Target:  5'- cGGCGGCGCAGgaGGUacugGCaugaGCACGCAc -3'
miRNA:   3'- cCCGCCGCGUCg-UCGg---CGa---CGUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.