miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26592 5' -62.1 NC_005357.1 + 2241 0.69 0.179354
Target:  5'- aGGCGGCGC-GUGGCCGC-GCAa--- -3'
miRNA:   3'- cCCGCCGCGuCGUCGGCGaCGUgugu -5'
26592 5' -62.1 NC_005357.1 + 23652 0.7 0.148525
Target:  5'- cGGCGGCG-GGCAGCaaCUGCAC-CAg -3'
miRNA:   3'- cCCGCCGCgUCGUCGgcGACGUGuGU- -5'
26592 5' -62.1 NC_005357.1 + 37082 0.7 0.152614
Target:  5'- aGGCGGCcacGCAGCGcgauGCCauGCUGCGcCACGu -3'
miRNA:   3'- cCCGCCG---CGUCGU----CGG--CGACGU-GUGU- -5'
26592 5' -62.1 NC_005357.1 + 9341 0.7 0.156381
Target:  5'- cGGGCGGCggcauccuuuuGCAguugcuugaugauGCGGCCGCgUGCAUuguGCAg -3'
miRNA:   3'- -CCCGCCG-----------CGU-------------CGUCGGCG-ACGUG---UGU- -5'
26592 5' -62.1 NC_005357.1 + 16052 0.7 0.161099
Target:  5'- aGGCcaguucGCGCAcGUGGCCGCcGCGCGCGg -3'
miRNA:   3'- cCCGc-----CGCGU-CGUCGGCGaCGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 25723 0.7 0.162847
Target:  5'- cGGCGGggucgucguccucacCgGCGGCAGCaCGCUGgGCGCGc -3'
miRNA:   3'- cCCGCC---------------G-CGUCGUCG-GCGACgUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 14852 0.69 0.1655
Target:  5'- uGGCGGC-CAGCGccGCaCGCUGgGCGCc -3'
miRNA:   3'- cCCGCCGcGUCGU--CG-GCGACgUGUGu -5'
26592 5' -62.1 NC_005357.1 + 30520 0.69 0.170007
Target:  5'- aGGUGGCGCAGCuucucGaccaCGCUGUAuCGCGg -3'
miRNA:   3'- cCCGCCGCGUCGu----Cg---GCGACGU-GUGU- -5'
26592 5' -62.1 NC_005357.1 + 37996 0.69 0.177923
Target:  5'- uGGCGGUGUuGCGGCCGgguacgaccuacgaCUGcCGCACGc -3'
miRNA:   3'- cCCGCCGCGuCGUCGGC--------------GAC-GUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 24302 0.7 0.144143
Target:  5'- gGGGCGGUgaggucgGCgAGCAGCCGCggGuCAgGCGg -3'
miRNA:   3'- -CCCGCCG-------CG-UCGUCGGCGa-C-GUgUGU- -5'
26592 5' -62.1 NC_005357.1 + 27839 0.71 0.126025
Target:  5'- cGGUGGCGcCGGCcgcGCCGCUGCuCAa- -3'
miRNA:   3'- cCCGCCGC-GUCGu--CGGCGACGuGUgu -5'
26592 5' -62.1 NC_005357.1 + 37274 0.71 0.122597
Target:  5'- aGGGCGuGaGCAGCgacGGCCGCcUGCGCgGCAc -3'
miRNA:   3'- -CCCGC-CgCGUCG---UCGGCG-ACGUG-UGU- -5'
26592 5' -62.1 NC_005357.1 + 16822 0.75 0.0624
Target:  5'- aGGCGGCGCAGUucaCGCgGCGCAUAg -3'
miRNA:   3'- cCCGCCGCGUCGucgGCGaCGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 25770 0.74 0.076154
Target:  5'- uGGGCGGCgGCAaCgauGGCCGCgaUGCGCGCGg -3'
miRNA:   3'- -CCCGCCG-CGUcG---UCGGCG--ACGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 34880 0.73 0.0829
Target:  5'- cGGUGGCGCcgcggaucgAGCAcGCCGCcgaGCGCACGg -3'
miRNA:   3'- cCCGCCGCG---------UCGU-CGGCGa--CGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 9210 0.73 0.090215
Target:  5'- cGGCGGCGCGGCGcacguuCUGCgGCGCGCc -3'
miRNA:   3'- cCCGCCGCGUCGUc-----GGCGaCGUGUGu -5'
26592 5' -62.1 NC_005357.1 + 28141 0.73 0.092786
Target:  5'- cGGGCGGCaGCAGCuuGCCGgUGguCAg- -3'
miRNA:   3'- -CCCGCCG-CGUCGu-CGGCgACguGUgu -5'
26592 5' -62.1 NC_005357.1 + 41287 0.73 0.092786
Target:  5'- cGGCGaGCGCAaaCGGCCGCUGCuCAUg -3'
miRNA:   3'- cCCGC-CGCGUc-GUCGGCGACGuGUGu -5'
26592 5' -62.1 NC_005357.1 + 25620 0.73 0.095427
Target:  5'- cGGCGGCGCGGUcGCCaGCaGCGCGu- -3'
miRNA:   3'- cCCGCCGCGUCGuCGG-CGaCGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 18818 0.72 0.100924
Target:  5'- uGGCGGCGCAGgaAGCUGCgaauuuUGCGCGgCAu -3'
miRNA:   3'- cCCGCCGCGUCg-UCGGCG------ACGUGU-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.