miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26592 5' -62.1 NC_005357.1 + 33757 1.09 0.000117
Target:  5'- uGGGCGGCGCAGCAGCCGCUGCACACAg -3'
miRNA:   3'- -CCCGCCGCGUCGUCGGCGACGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 40290 0.82 0.016939
Target:  5'- cGGCGGCGCGGUugaccGGCUGCUGCACGa- -3'
miRNA:   3'- cCCGCCGCGUCG-----UCGGCGACGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 18680 0.78 0.035087
Target:  5'- cGGUGGCGcCGGCAuggcGCUGCUGCGCGCc -3'
miRNA:   3'- cCCGCCGC-GUCGU----CGGCGACGUGUGu -5'
26592 5' -62.1 NC_005357.1 + 5632 0.76 0.05727
Target:  5'- uGGcGCGGCGCAGCuugcuGGUgGCUGgACGCGg -3'
miRNA:   3'- -CC-CGCCGCGUCG-----UCGgCGACgUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 16822 0.75 0.0624
Target:  5'- aGGCGGCGCAGUucaCGCgGCGCAUAg -3'
miRNA:   3'- cCCGCCGCGUCGucgGCGaCGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 15606 0.74 0.074025
Target:  5'- gGGGCGGCGCAGCcuGCCaaaaaCaGCACGCc -3'
miRNA:   3'- -CCCGCCGCGUCGu-CGGc----GaCGUGUGu -5'
26592 5' -62.1 NC_005357.1 + 14615 0.74 0.075509
Target:  5'- cGGGCaGCGCGcgcgaggacgugcuGCGGCUGCgcgGCGCGCGc -3'
miRNA:   3'- -CCCGcCGCGU--------------CGUCGGCGa--CGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 25770 0.74 0.076154
Target:  5'- uGGGCGGCgGCAaCgauGGCCGCgaUGCGCGCGg -3'
miRNA:   3'- -CCCGCCG-CGUcG---UCGGCG--ACGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 14724 0.74 0.080591
Target:  5'- cGGCGGCG-AGCcGCUGCcgGCGCGCGg -3'
miRNA:   3'- cCCGCCGCgUCGuCGGCGa-CGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 34880 0.73 0.0829
Target:  5'- cGGUGGCGCcgcggaucgAGCAcGCCGCcgaGCGCACGg -3'
miRNA:   3'- cCCGCCGCG---------UCGU-CGGCGa--CGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 9210 0.73 0.090215
Target:  5'- cGGCGGCGCGGCGcacguuCUGCgGCGCGCc -3'
miRNA:   3'- cCCGCCGCGUCGUc-----GGCGaCGUGUGu -5'
26592 5' -62.1 NC_005357.1 + 28141 0.73 0.092786
Target:  5'- cGGGCGGCaGCAGCuuGCCGgUGguCAg- -3'
miRNA:   3'- -CCCGCCG-CGUCGu-CGGCgACguGUgu -5'
26592 5' -62.1 NC_005357.1 + 41287 0.73 0.092786
Target:  5'- cGGCGaGCGCAaaCGGCCGCUGCuCAUg -3'
miRNA:   3'- cCCGC-CGCGUc-GUCGGCGACGuGUGu -5'
26592 5' -62.1 NC_005357.1 + 25620 0.73 0.095427
Target:  5'- cGGCGGCGCGGUcGCCaGCaGCGCGu- -3'
miRNA:   3'- cCCGCCGCGUCGuCGG-CGaCGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 7894 0.72 0.100081
Target:  5'- aGGGCGGCGCgugcguagaucgccAGCuGCuCGUUGCGCuCGg -3'
miRNA:   3'- -CCCGCCGCG--------------UCGuCG-GCGACGUGuGU- -5'
26592 5' -62.1 NC_005357.1 + 18818 0.72 0.100924
Target:  5'- uGGCGGCGCAGgaAGCUGCgaauuuUGCGCGgCAu -3'
miRNA:   3'- cCCGCCGCGUCg-UCGGCG------ACGUGU-GU- -5'
26592 5' -62.1 NC_005357.1 + 31286 0.72 0.106718
Target:  5'- aGGCGGCccaGCAGCAgGCCGaaCUGCuCGCAc -3'
miRNA:   3'- cCCGCCG---CGUCGU-CGGC--GACGuGUGU- -5'
26592 5' -62.1 NC_005357.1 + 18291 0.71 0.115998
Target:  5'- uGGGCcaGGCGC-GCAGCCgGCUGgACuACGa -3'
miRNA:   3'- -CCCG--CCGCGuCGUCGG-CGACgUG-UGU- -5'
26592 5' -62.1 NC_005357.1 + 37274 0.71 0.122597
Target:  5'- aGGGCGuGaGCAGCgacGGCCGCcUGCGCgGCAc -3'
miRNA:   3'- -CCCGC-CgCGUCG---UCGGCG-ACGUG-UGU- -5'
26592 5' -62.1 NC_005357.1 + 27839 0.71 0.126025
Target:  5'- cGGUGGCGcCGGCcgcGCCGCUGCuCAa- -3'
miRNA:   3'- cCCGCCGC-GUCGu--CGGCGACGuGUgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.