miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26592 5' -62.1 NC_005357.1 + 40290 0.82 0.016939
Target:  5'- cGGCGGCGCGGUugaccGGCUGCUGCACGa- -3'
miRNA:   3'- cCCGCCGCGUCG-----UCGGCGACGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 8739 0.68 0.194226
Target:  5'- cGGCgGGCGCGGCGcuaCCGUcaacauggaauuUGCGCGCGg -3'
miRNA:   3'- cCCG-CCGCGUCGUc--GGCG------------ACGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 26363 0.68 0.204732
Target:  5'- cGGCGccgcGCGCGGCGGCCaCgUGCGCGa- -3'
miRNA:   3'- cCCGC----CGCGUCGUCGGcG-ACGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 35206 0.66 0.292634
Target:  5'- aGGGUGaGCGCGGCGcagauGCUGCcGUGgACAu -3'
miRNA:   3'- -CCCGC-CGCGUCGU-----CGGCGaCGUgUGU- -5'
26592 5' -62.1 NC_005357.1 + 14615 0.74 0.075509
Target:  5'- cGGGCaGCGCGcgcgaggacgugcuGCGGCUGCgcgGCGCGCGc -3'
miRNA:   3'- -CCCGcCGCGU--------------CGUCGGCGa--CGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 14724 0.74 0.080591
Target:  5'- cGGCGGCG-AGCcGCUGCcgGCGCGCGg -3'
miRNA:   3'- cCCGCCGCgUCGuCGGCGa-CGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 31286 0.72 0.106718
Target:  5'- aGGCGGCccaGCAGCAgGCCGaaCUGCuCGCAc -3'
miRNA:   3'- cCCGCCG---CGUCGU-CGGC--GACGuGUGU- -5'
26592 5' -62.1 NC_005357.1 + 18291 0.71 0.115998
Target:  5'- uGGGCcaGGCGC-GCAGCCgGCUGgACuACGa -3'
miRNA:   3'- -CCCG--CCGCGuCGUCGG-CGACgUG-UGU- -5'
26592 5' -62.1 NC_005357.1 + 38547 0.7 0.144536
Target:  5'- cGGCGGCGaCGGCAGC-GCgGCcUACAg -3'
miRNA:   3'- cCCGCCGC-GUCGUCGgCGaCGuGUGU- -5'
26592 5' -62.1 NC_005357.1 + 21256 0.69 0.191168
Target:  5'- aGGCcGCGCAGCAgGCCGCgcuguugaaccaggGCGCGg- -3'
miRNA:   3'- cCCGcCGCGUCGU-CGGCGa-------------CGUGUgu -5'
26592 5' -62.1 NC_005357.1 + 8300 0.7 0.152614
Target:  5'- gGGGCaGUGCAGcCAGCgG-UGCGCGCu -3'
miRNA:   3'- -CCCGcCGCGUC-GUCGgCgACGUGUGu -5'
26592 5' -62.1 NC_005357.1 + 9988 0.71 0.136851
Target:  5'- gGGGCGuaGgGGCAGUCGCUGC-CGu- -3'
miRNA:   3'- -CCCGCcgCgUCGUCGGCGACGuGUgu -5'
26592 5' -62.1 NC_005357.1 + 18680 0.78 0.035087
Target:  5'- cGGUGGCGcCGGCAuggcGCUGCUGCGCGCc -3'
miRNA:   3'- cCCGCCGC-GUCGU----CGGCGACGUGUGu -5'
26592 5' -62.1 NC_005357.1 + 16092 0.69 0.170007
Target:  5'- -aGCGGCGCGGcCAGuUCGCgGUGCGCGu -3'
miRNA:   3'- ccCGCCGCGUC-GUC-GGCGaCGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 5632 0.76 0.05727
Target:  5'- uGGcGCGGCGCAGCuugcuGGUgGCUGgACGCGg -3'
miRNA:   3'- -CC-CGCCGCGUCG-----UCGgCGACgUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 8667 0.71 0.133151
Target:  5'- -cGCuGuGUGCAGCGGCUGCUGCGC-CGc -3'
miRNA:   3'- ccCG-C-CGCGUCGUCGGCGACGUGuGU- -5'
26592 5' -62.1 NC_005357.1 + 33032 0.69 0.179354
Target:  5'- -cGCGGCcugcgcgacauGCAGUGGCUGCacaaUGCACGCGg -3'
miRNA:   3'- ccCGCCG-----------CGUCGUCGGCG----ACGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 38850 0.68 0.204196
Target:  5'- uGGCGGcCGCGGaucgguguacgccCAGcCCGCUGCuGCGCu -3'
miRNA:   3'- cCCGCC-GCGUC-------------GUC-GGCGACG-UGUGu -5'
26592 5' -62.1 NC_005357.1 + 15606 0.74 0.074025
Target:  5'- gGGGCGGCGCAGCcuGCCaaaaaCaGCACGCc -3'
miRNA:   3'- -CCCGCCGCGUCGu-CGGc----GaCGUGUGu -5'
26592 5' -62.1 NC_005357.1 + 7894 0.72 0.100081
Target:  5'- aGGGCGGCGCgugcguagaucgccAGCuGCuCGUUGCGCuCGg -3'
miRNA:   3'- -CCCGCCGCG--------------UCGuCG-GCGACGUGuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.