Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26592 | 5' | -62.1 | NC_005357.1 | + | 26141 | 0.67 | 0.251772 |
Target: 5'- cGGCagauuuGGCGCAGCGGCuCGCcgucugcgaUGCGguCGCAg -3' miRNA: 3'- cCCG------CCGCGUCGUCG-GCG---------ACGU--GUGU- -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 276 | 0.67 | 0.251772 |
Target: 5'- aGGCacGGCGUccAGUAGCUGCgccggaagGCGCGCu -3' miRNA: 3'- cCCG--CCGCG--UCGUCGGCGa-------CGUGUGu -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 14960 | 0.67 | 0.251772 |
Target: 5'- -cGUGGUGCguGGCGGCgCGCUGgCAUACc -3' miRNA: 3'- ccCGCCGCG--UCGUCG-GCGAC-GUGUGu -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 7703 | 0.67 | 0.251772 |
Target: 5'- cGGCGGC-CGGCuuGCCGaugaaCUGCAgCGCAc -3' miRNA: 3'- cCCGCCGcGUCGu-CGGC-----GACGU-GUGU- -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 18342 | 0.67 | 0.245437 |
Target: 5'- gGGGUGcccgugccccGCGCGGUcGCCGCuacUGUGCGCGg -3' miRNA: 3'- -CCCGC----------CGCGUCGuCGGCG---ACGUGUGU- -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 3572 | 0.67 | 0.245437 |
Target: 5'- cGGGCugGGCGUAcaccgauccGCGGCCGCcagUGUugGCc -3' miRNA: 3'- -CCCG--CCGCGU---------CGUCGGCG---ACGugUGu -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 22246 | 0.67 | 0.239235 |
Target: 5'- aGGGCGaCGacaaGGCgaAGCCGCaagGCGCACc -3' miRNA: 3'- -CCCGCcGCg---UCG--UCGGCGa--CGUGUGu -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 39849 | 0.67 | 0.233164 |
Target: 5'- aGGGCGGCaagcgcgcGCAcGCgcugGGCCGUgucGCACAUg -3' miRNA: 3'- -CCCGCCG--------CGU-CG----UCGGCGa--CGUGUGu -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 41937 | 0.67 | 0.233164 |
Target: 5'- -cGCGGCGCAGUAuGCUGCcgagGCAUcCGa -3' miRNA: 3'- ccCGCCGCGUCGU-CGGCGa---CGUGuGU- -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 42077 | 0.67 | 0.233164 |
Target: 5'- cGGGCcuGGCGgA-CGGCCuGCUGCGCGa- -3' miRNA: 3'- -CCCG--CCGCgUcGUCGG-CGACGUGUgu -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 34074 | 0.68 | 0.210168 |
Target: 5'- cGGCGGCGCAGgaGGUacugGCaugaGCACGCAc -3' miRNA: 3'- cCCGCCGCGUCg-UCGg---CGa---CGUGUGU- -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 15888 | 0.68 | 0.204732 |
Target: 5'- cGGGCacguaggugaGGCccaGCAGCuuGCCGCUGCuGCugAu -3' miRNA: 3'- -CCCG----------CCG---CGUCGu-CGGCGACG-UGugU- -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 26363 | 0.68 | 0.204732 |
Target: 5'- cGGCGccgcGCGCGGCGGCCaCgUGCGCGa- -3' miRNA: 3'- cCCGC----CGCGUCGUCGGcG-ACGUGUgu -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 38850 | 0.68 | 0.204196 |
Target: 5'- uGGCGGcCGCGGaucgguguacgccCAGcCCGCUGCuGCGCu -3' miRNA: 3'- cCCGCC-GCGUC-------------GUC-GGCGACG-UGUGu -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 8748 | 0.68 | 0.20366 |
Target: 5'- aGGGCGcGCGC-GUAuucacguGCCGCUucgggcaGCACGCGg -3' miRNA: 3'- -CCCGC-CGCGuCGU-------CGGCGA-------CGUGUGU- -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 29951 | 0.68 | 0.199419 |
Target: 5'- aGGUGGUGCuuGUcGUCGCgGCGCACGa -3' miRNA: 3'- cCCGCCGCGu-CGuCGGCGaCGUGUGU- -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 27451 | 0.68 | 0.199419 |
Target: 5'- aGGCccuGGCGCugguaugccAGCGcGCCGC-GCACGCAc -3' miRNA: 3'- cCCG---CCGCG---------UCGU-CGGCGaCGUGUGU- -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 27794 | 0.68 | 0.194226 |
Target: 5'- -aGCGcGCGCcgcGCAGCCGCaGCACGu- -3' miRNA: 3'- ccCGC-CGCGu--CGUCGGCGaCGUGUgu -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 8739 | 0.68 | 0.194226 |
Target: 5'- cGGCgGGCGCGGCGcuaCCGUcaacauggaauuUGCGCGCGg -3' miRNA: 3'- cCCG-CCGCGUCGUc--GGCG------------ACGUGUGU- -5' |
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26592 | 5' | -62.1 | NC_005357.1 | + | 21256 | 0.69 | 0.191168 |
Target: 5'- aGGCcGCGCAGCAgGCCGCgcuguugaaccaggGCGCGg- -3' miRNA: 3'- cCCGcCGCGUCGU-CGGCGa-------------CGUGUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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