Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26595 | 3' | -63.1 | NC_005357.1 | + | 682 | 0.68 | 0.18633 |
Target: 5'- cGCCUaCGGCGGCGccGGCCg-GGccGCCc -3' miRNA: 3'- -CGGG-GCCGUCGCa-CCGGgaCCuuCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 964 | 0.68 | 0.206692 |
Target: 5'- uGCCCaCGGCAGCuugcagccacuUGGCcgCCUGGcgguGCCg -3' miRNA: 3'- -CGGG-GCCGUCGc----------ACCG--GGACCuu--CGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 1534 | 0.7 | 0.143005 |
Target: 5'- cGCCCa-GCAGUucGGCCUUGGuaAAGCCg -3' miRNA: 3'- -CGGGgcCGUCGcaCCGGGACC--UUCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 1952 | 0.69 | 0.160804 |
Target: 5'- gGUUCUGGUcgAGCGcgcGGCCCUGGGggaaggcacgcuguaGGCCg -3' miRNA: 3'- -CGGGGCCG--UCGCa--CCGGGACCU---------------UCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 4044 | 0.67 | 0.234822 |
Target: 5'- gGCCgCGGCgAGCGgcaggccagcGGCCCaggggggauUGGuAGCCa -3' miRNA: 3'- -CGGgGCCG-UCGCa---------CCGGG---------ACCuUCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 6339 | 0.67 | 0.24082 |
Target: 5'- cGCCCCaGCcaaAGCGcccGGCCCga-AGGCCg -3' miRNA: 3'- -CGGGGcCG---UCGCa--CCGGGaccUUCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 7627 | 0.66 | 0.266097 |
Target: 5'- aGCgCCGGaCA-CGUGGCCUUGGccuuGCa -3' miRNA: 3'- -CGgGGCC-GUcGCACCGGGACCuu--CGg -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 8166 | 0.68 | 0.201428 |
Target: 5'- cGUCCCuGC-GCGUGcGCCC-GGAugcuGCCg -3' miRNA: 3'- -CGGGGcCGuCGCAC-CGGGaCCUu---CGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 8861 | 0.67 | 0.234822 |
Target: 5'- aGCCCaggacggugCGGUAGCGUucGGCCUUGGc-GUCc -3' miRNA: 3'- -CGGG---------GCCGUCGCA--CCGGGACCuuCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 10073 | 0.66 | 0.259583 |
Target: 5'- gGCCUCGGCGGCGaccGCagcgaCCUGGGcGGCg -3' miRNA: 3'- -CGGGGCCGUCGCac-CG-----GGACCU-UCGg -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 10457 | 0.74 | 0.074091 |
Target: 5'- cGCCCU--UGGCGUcGCCCUGGAAGUCg -3' miRNA: 3'- -CGGGGccGUCGCAcCGGGACCUUCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 11514 | 0.67 | 0.234822 |
Target: 5'- aGCgCCUGcGCuGGCGUgaGGCCCUGcGAGCg -3' miRNA: 3'- -CG-GGGC-CG-UCGCA--CCGGGACcUUCGg -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 12300 | 0.68 | 0.191249 |
Target: 5'- uGCaggCCGGCGGCGU-GUUCUGGcgcGGCCu -3' miRNA: 3'- -CGg--GGCCGUCGCAcCGGGACCu--UCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 13078 | 0.74 | 0.072053 |
Target: 5'- gGCCaCCGGC-GCGUGGUUCgaGGAcuuGGCCg -3' miRNA: 3'- -CGG-GGCCGuCGCACCGGGa-CCU---UCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 13157 | 0.66 | 0.279522 |
Target: 5'- cGCCUcgauguCGGcCAGUGUcGGCCgcgCUGGgcGCCc -3' miRNA: 3'- -CGGG------GCC-GUCGCA-CCGG---GACCuuCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 13407 | 0.71 | 0.118375 |
Target: 5'- -aCCUGGCcgaAGCGcGGCgCCUGGucGCCu -3' miRNA: 3'- cgGGGCCG---UCGCaCCG-GGACCuuCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 14207 | 0.66 | 0.286433 |
Target: 5'- -aCCCGcGCguggucgucGGCGUGGCcgaCCUGGAcaaggcGCCg -3' miRNA: 3'- cgGGGC-CG---------UCGCACCG---GGACCUu-----CGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 14815 | 0.67 | 0.252568 |
Target: 5'- aCCUCGGCGGCGcUGccuucGCCCaggucgaugccguUGGcGGCCa -3' miRNA: 3'- cGGGGCCGUCGC-AC-----CGGG-------------ACCuUCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 14943 | 0.68 | 0.191249 |
Target: 5'- gGCCgCCGGCAuccucGCGUGGUgCgUGGcGGCg -3' miRNA: 3'- -CGG-GGCCGU-----CGCACCGgG-ACCuUCGg -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 17748 | 0.68 | 0.191249 |
Target: 5'- aGCCUgGGCguGGaCGUGGCCCgcggcGGgcGCg -3' miRNA: 3'- -CGGGgCCG--UC-GCACCGGGa----CCuuCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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