Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26595 | 3' | -63.1 | NC_005357.1 | + | 27706 | 0.67 | 0.255737 |
Target: 5'- cGCgCCGGCAGCGgcucgccgccggucaUGGaCUUGauGAGGCCc -3' miRNA: 3'- -CGgGGCCGUCGC---------------ACCgGGAC--CUUCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 32376 | 0.68 | 0.206692 |
Target: 5'- gGCCCCGGCc-----GCCCagcaGGAAGCCa -3' miRNA: 3'- -CGGGGCCGucgcacCGGGa---CCUUCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 21161 | 0.67 | 0.217577 |
Target: 5'- cGCCCUGGUucaacAGCGcGGCCUgcUGcGcGGCCu -3' miRNA: 3'- -CGGGGCCG-----UCGCaCCGGG--AC-CuUCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 35255 | 0.67 | 0.223202 |
Target: 5'- cGCCCCcGaauccgacaAGCGcccGGCCCUGGucauccAGGCCg -3' miRNA: 3'- -CGGGGcCg--------UCGCa--CCGGGACC------UUCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 11514 | 0.67 | 0.234822 |
Target: 5'- aGCgCCUGcGCuGGCGUgaGGCCCUGcGAGCg -3' miRNA: 3'- -CG-GGGC-CG-UCGCA--CCGGGACcUUCGg -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 22744 | 0.67 | 0.24082 |
Target: 5'- uGCCCCaGCAGaGUGgacuuGCCCaGGGugagGGCCg -3' miRNA: 3'- -CGGGGcCGUCgCAC-----CGGGaCCU----UCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 25538 | 0.67 | 0.246945 |
Target: 5'- cGCCgCCGGCAGCGcc-CCCgu--AGCCg -3' miRNA: 3'- -CGG-GGCCGUCGCaccGGGaccuUCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 28777 | 0.67 | 0.246945 |
Target: 5'- cGCgCaCGGCGucGCGcuuGCCCUGGuuGCCg -3' miRNA: 3'- -CGgG-GCCGU--CGCac-CGGGACCuuCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 14815 | 0.67 | 0.252568 |
Target: 5'- aCCUCGGCGGCGcUGccuucGCCCaggucgaugccguUGGcGGCCa -3' miRNA: 3'- cGGGGCCGUCGC-AC-----CGGG-------------ACCuUCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 964 | 0.68 | 0.206692 |
Target: 5'- uGCCCaCGGCAGCuugcagccacuUGGCcgCCUGGcgguGCCg -3' miRNA: 3'- -CGGG-GCCGUCGc----------ACCG--GGACCuu--CGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 8166 | 0.68 | 0.201428 |
Target: 5'- cGUCCCuGC-GCGUGcGCCC-GGAugcuGCCg -3' miRNA: 3'- -CGGGGcCGuCGCAC-CGGGaCCUu---CGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 19013 | 0.68 | 0.196281 |
Target: 5'- uGUCCCacuuguaguGGguGCGguaGCCCUGGuagcGGCCg -3' miRNA: 3'- -CGGGG---------CCguCGCac-CGGGACCu---UCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 27435 | 0.76 | 0.048619 |
Target: 5'- cGCgCCCGGCGGCcgcaGGCCCUGGcgcugguauGCCa -3' miRNA: 3'- -CG-GGGCCGUCGca--CCGGGACCuu-------CGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 20208 | 0.76 | 0.053517 |
Target: 5'- gGUCuuGGCAGCGcccgcggccggcuguUGGCCUUGGguGCCu -3' miRNA: 3'- -CGGggCCGUCGC---------------ACCGGGACCuuCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 28586 | 0.75 | 0.063887 |
Target: 5'- gGCCaCCGGCAGCGUGGugucggucaguuCCUUGaaccgggcgcggauGAGGCCg -3' miRNA: 3'- -CGG-GGCCGUCGCACC------------GGGAC--------------CUUCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 10457 | 0.74 | 0.074091 |
Target: 5'- cGCCCU--UGGCGUcGCCCUGGAAGUCg -3' miRNA: 3'- -CGGGGccGUCGCAcCGGGACCUUCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 31233 | 0.71 | 0.118375 |
Target: 5'- aCCCCGGC-GCGcGGCCCaGcuacGAGCCg -3' miRNA: 3'- cGGGGCCGuCGCaCCGGGaCc---UUCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 1534 | 0.7 | 0.143005 |
Target: 5'- cGCCCa-GCAGUucGGCCUUGGuaAAGCCg -3' miRNA: 3'- -CGGGgcCGUCGcaCCGGGACC--UUCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 682 | 0.68 | 0.18633 |
Target: 5'- cGCCUaCGGCGGCGccGGCCg-GGccGCCc -3' miRNA: 3'- -CGGG-GCCGUCGCa-CCGGgaCCuuCGG- -5' |
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26595 | 3' | -63.1 | NC_005357.1 | + | 18367 | 0.68 | 0.188284 |
Target: 5'- uUgCCGGCGGCGagguUGGCCUugccgauggcgccggUGGcGGCCa -3' miRNA: 3'- cGgGGCCGUCGC----ACCGGG---------------ACCuUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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