miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26598 3' -59.6 NC_005357.1 + 41819 0.74 0.137792
Target:  5'- uCCAcgGCGCugcuGGCCGACCCGCagGCGg -3'
miRNA:   3'- -GGUagUGCGc---UCGGCUGGGCGagCGC- -5'
26598 3' -59.6 NC_005357.1 + 40187 0.7 0.251869
Target:  5'- uUCAUUGCGCGGccacgcGCCG-CCUGCUgCGCGu -3'
miRNA:   3'- -GGUAGUGCGCU------CGGCuGGGCGA-GCGC- -5'
26598 3' -59.6 NC_005357.1 + 39167 0.67 0.414758
Target:  5'- aCUAUCugGCGcggaAGCUGAauCCCGC-CGgGg -3'
miRNA:   3'- -GGUAGugCGC----UCGGCU--GGGCGaGCgC- -5'
26598 3' -59.6 NC_005357.1 + 38941 0.67 0.387864
Target:  5'- uCUggUACaGCGGGCCGucguuCUCGUUCGCGu -3'
miRNA:   3'- -GGuaGUG-CGCUCGGCu----GGGCGAGCGC- -5'
26598 3' -59.6 NC_005357.1 + 38209 0.7 0.245596
Target:  5'- aCGUUACGCaAGCCgcaagccgcGACgUGCUCGCGg -3'
miRNA:   3'- gGUAGUGCGcUCGG---------CUGgGCGAGCGC- -5'
26598 3' -59.6 NC_005357.1 + 37412 0.66 0.471812
Target:  5'- gCAUCGCggcgcugaaaGCGGacugcGCCGACCUGCuguUCGCc -3'
miRNA:   3'- gGUAGUG----------CGCU-----CGGCUGGGCG---AGCGc -5'
26598 3' -59.6 NC_005357.1 + 36134 0.66 0.423974
Target:  5'- gCCGUCAauguCGUGGG-CGACCUGUUCGg- -3'
miRNA:   3'- -GGUAGU----GCGCUCgGCUGGGCGAGCgc -5'
26598 3' -59.6 NC_005357.1 + 36036 0.66 0.433311
Target:  5'- aCUA-CAC-CGGGCCGGCCgGCcUGCGc -3'
miRNA:   3'- -GGUaGUGcGCUCGGCUGGgCGaGCGC- -5'
26598 3' -59.6 NC_005357.1 + 35423 1.09 0.000322
Target:  5'- cCCAUCACGCGAGCCGACCCGCUCGCGc -3'
miRNA:   3'- -GGUAGUGCGCUCGGCUGGGCGAGCGC- -5'
26598 3' -59.6 NC_005357.1 + 34980 0.67 0.379158
Target:  5'- gCCAuUCGCGCGAagGCCGAagccgaaCUGCUgGCc -3'
miRNA:   3'- -GGU-AGUGCGCU--CGGCUg------GGCGAgCGc -5'
26598 3' -59.6 NC_005357.1 + 33639 0.67 0.413843
Target:  5'- aCCG--GCGCG-GCCGACCCaucgugcGC-CGCGu -3'
miRNA:   3'- -GGUagUGCGCuCGGCUGGG-------CGaGCGC- -5'
26598 3' -59.6 NC_005357.1 + 33587 0.66 0.471812
Target:  5'- gCCA--ACGC--GCUGGCCCGCgUUGCGg -3'
miRNA:   3'- -GGUagUGCGcuCGGCUGGGCG-AGCGC- -5'
26598 3' -59.6 NC_005357.1 + 31933 0.69 0.299512
Target:  5'- uUCGUCAa--GAGCaCGGCCCGUUCGgGc -3'
miRNA:   3'- -GGUAGUgcgCUCG-GCUGGGCGAGCgC- -5'
26598 3' -59.6 NC_005357.1 + 31325 0.67 0.405666
Target:  5'- aCCAaUugGcCGcAGCCGACaaggUGCUCGCGc -3'
miRNA:   3'- -GGUaGugC-GC-UCGGCUGg---GCGAGCGC- -5'
26598 3' -59.6 NC_005357.1 + 31249 0.67 0.405666
Target:  5'- aCCAUCACcaCG-GCCGACCagCGCaCGCa -3'
miRNA:   3'- -GGUAGUGc-GCuCGGCUGG--GCGaGCGc -5'
26598 3' -59.6 NC_005357.1 + 30355 0.72 0.199983
Target:  5'- gUCGUCGCGCGAGa--ACCCGC-CGCu -3'
miRNA:   3'- -GGUAGUGCGCUCggcUGGGCGaGCGc -5'
26598 3' -59.6 NC_005357.1 + 30129 0.69 0.285224
Target:  5'- gCCAgaaCACGCc-GCCGGCCUGCacCGCGu -3'
miRNA:   3'- -GGUa--GUGCGcuCGGCUGGGCGa-GCGC- -5'
26598 3' -59.6 NC_005357.1 + 27820 0.68 0.362142
Target:  5'- uCC-UCGCGCGcGCUG-CCCGCgguggCGCc -3'
miRNA:   3'- -GGuAGUGCGCuCGGCuGGGCGa----GCGc -5'
26598 3' -59.6 NC_005357.1 + 26246 0.68 0.359636
Target:  5'- gCGUCGC-CGAaggcacgggcacccGCCGGCCUggucgGCUCGCGc -3'
miRNA:   3'- gGUAGUGcGCU--------------CGGCUGGG-----CGAGCGC- -5'
26598 3' -59.6 NC_005357.1 + 25840 0.73 0.166297
Target:  5'- aCCAUCGCGUG-GUCGGCCuCGUccggCGCGu -3'
miRNA:   3'- -GGUAGUGCGCuCGGCUGG-GCGa---GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.