miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26598 3' -59.6 NC_005357.1 + 865 0.69 0.2923
Target:  5'- aCAUCAUGCGAGCCGAgUUGaacaGCa -3'
miRNA:   3'- gGUAGUGCGCUCGGCUgGGCgag-CGc -5'
26598 3' -59.6 NC_005357.1 + 1748 0.66 0.442767
Target:  5'- aCAcCGgGCGgucauGGCCGGCCUGCgccuggCGCGu -3'
miRNA:   3'- gGUaGUgCGC-----UCGGCUGGGCGa-----GCGC- -5'
26598 3' -59.6 NC_005357.1 + 4528 0.67 0.379158
Target:  5'- aCGUgGCGUGcugggcGGUCGugCCGC-CGCGg -3'
miRNA:   3'- gGUAgUGCGC------UCGGCugGGCGaGCGC- -5'
26598 3' -59.6 NC_005357.1 + 5349 0.67 0.379158
Target:  5'- gCAUCGCGCugcguGGCCG-CCUGCacCGCGc -3'
miRNA:   3'- gGUAGUGCGc----UCGGCuGGGCGa-GCGC- -5'
26598 3' -59.6 NC_005357.1 + 6385 0.69 0.306861
Target:  5'- -aAUCAgGCGcaGGCCGGCCgGCccgguguagUCGCGg -3'
miRNA:   3'- ggUAGUgCGC--UCGGCUGGgCG---------AGCGC- -5'
26598 3' -59.6 NC_005357.1 + 6998 0.73 0.149415
Target:  5'- aCA-CGCGCGAGCgGGUCgGCUCGCGu -3'
miRNA:   3'- gGUaGUGCGCUCGgCUGGgCGAGCGC- -5'
26598 3' -59.6 NC_005357.1 + 8220 0.66 0.452338
Target:  5'- gCCAguucgUGCGCG-GCCGugCC-CUCGuCGg -3'
miRNA:   3'- -GGUa----GUGCGCuCGGCugGGcGAGC-GC- -5'
26598 3' -59.6 NC_005357.1 + 8658 0.69 0.299512
Target:  5'- uUCAUCGCGCGgucGGCauugCGugCCGCgCGCa -3'
miRNA:   3'- -GGUAGUGCGC---UCG----GCugGGCGaGCGc -5'
26598 3' -59.6 NC_005357.1 + 9528 0.66 0.465924
Target:  5'- gCAUCAUGCugcGGCCcuguucggccagugcGAUCUGCUCGCc -3'
miRNA:   3'- gGUAGUGCGc--UCGG---------------CUGGGCGAGCGc -5'
26598 3' -59.6 NC_005357.1 + 10196 0.66 0.471812
Target:  5'- aCGUCAaGCGcacGCCGGCCCGauggUCgGCGg -3'
miRNA:   3'- gGUAGUgCGCu--CGGCUGGGCg---AG-CGC- -5'
26598 3' -59.6 NC_005357.1 + 11462 0.66 0.442767
Target:  5'- aCCGUCACGCcgaaguAGUCcGCCaGCUUGCGu -3'
miRNA:   3'- -GGUAGUGCGc-----UCGGcUGGgCGAGCGC- -5'
26598 3' -59.6 NC_005357.1 + 12542 0.66 0.423974
Target:  5'- cCUGUCAUGCcggggggggugGuGCUaGACCCGUUCGCa -3'
miRNA:   3'- -GGUAGUGCG-----------CuCGG-CUGGGCGAGCGc -5'
26598 3' -59.6 NC_005357.1 + 12853 0.67 0.387864
Target:  5'- gCCuggGCGCG-GCCGACCUGa-CGCGa -3'
miRNA:   3'- -GGuagUGCGCuCGGCUGGGCgaGCGC- -5'
26598 3' -59.6 NC_005357.1 + 13223 0.66 0.452338
Target:  5'- gCCAUgCGCGCGu-CCGACCUGC-CGg- -3'
miRNA:   3'- -GGUA-GUGCGCucGGCUGGGCGaGCgc -5'
26598 3' -59.6 NC_005357.1 + 14193 0.7 0.27148
Target:  5'- ---cCugGCGcAGuCCGACCCGCgCGUGg -3'
miRNA:   3'- gguaGugCGC-UC-GGCUGGGCGaGCGC- -5'
26598 3' -59.6 NC_005357.1 + 14618 0.68 0.345665
Target:  5'- gCAgcgCGCGCGAGgaCGugCUGCggcugCGCGg -3'
miRNA:   3'- gGUa--GUGCGCUCg-GCugGGCGa----GCGC- -5'
26598 3' -59.6 NC_005357.1 + 14716 0.7 0.27148
Target:  5'- uCCAUgACcggcgGCGAGCCGcuGCCgGCgCGCGg -3'
miRNA:   3'- -GGUAgUG-----CGCUCGGC--UGGgCGaGCGC- -5'
26598 3' -59.6 NC_005357.1 + 15239 0.66 0.442767
Target:  5'- aUCAUCaACGgcagaGGGUCGGCCUGC-CGCa -3'
miRNA:   3'- -GGUAG-UGCg----CUCGGCUGGGCGaGCGc -5'
26598 3' -59.6 NC_005357.1 + 16147 0.74 0.145444
Target:  5'- uCCAUCgcgcgcgauGCGCGAGCCGACCagGC-CgGCGg -3'
miRNA:   3'- -GGUAG---------UGCGCUCGGCUGGg-CGaG-CGC- -5'
26598 3' -59.6 NC_005357.1 + 16275 0.67 0.396701
Target:  5'- gCAUCGCagacgGCGAGCCGcugcgccaaAUCUGC-CGCGa -3'
miRNA:   3'- gGUAGUG-----CGCUCGGC---------UGGGCGaGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.